Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0054 ATGAGATTCCACTTGCTAGGTACAGAGATTATCTCTTCAATATTTGCAAGGAAACTTCTAGAGGGAAGCGCAGAATTGGAGGTCATTGAATACACAGAGATGGGTTGCAGAAGCAGAGAAATCTTCTCAGATGACTCTTCTTCCTCTTCTTCACTGTGTGAAGCTTTGCTCTTCGCCACCATGTACATCATTGGCCTTCCTGTTGACGTTCATGTTAAGGATGGTTCTGTGTATTCTGGAATATTCCACACTGCTTCTGTTGACAAGGGTTACAGTATCATTTTGAAGAAAGCAAGGAGGATCAAGAAGGGAAAAGGTGACGCAAATGTGGGAAAGCAGGGGTTAATAGATACTCTAGTAATACAATCAGGTGACCTTGTGCAAGTTGTTGCTAAGGGTGTAATGCTTCCTGCAAATGGTGTTAGTGGAAAGATGACTAGTAACGATGAAGAGGCAGCTGAACATACTGCTTCTAGTGAAGAGAAACCGAAAGGCTCTCTGATGGATGATAAAATACAAGTTGATCAATCAAGCGGCAGTAGTGTGGTGGTCTTGGTGTATGAAGTCAGGGGTGGCTACATCTTCTATAGTCAGACCTTGCTGGCTAATGGGGATGGAAATGACATGGTGAAAGGGAAAACTGGTGATTGCAGACAGAAGTTTGAGCTTGCTGAAGAAAAAAATGTTGAAAAGATTCAAGGCCATTCTCTGCGTCCTGAAGTGGATGCATGTCCTGCGCAAGTAGACTTTGCTGAACATGGGCATGCATGCATGACATCTAAACCTTCTGGAAATGGGTCATACAGTGCTCCAGAATCTGTTAAAGCTAATGATCAATGTTTTGAGAAATCTAATTTAGCCAACTTCGCTGCTACTGATACCACTAAATTTGTGGATCATATCTCAGAGTCGCATAATATGTCAACAAAATCTGTACCAAGGAGTACAGAATCGATGAAGAATTCTAAGGAATTCAAGCTTAACCCAGCTGCCAAAGTTTTCTCTCCATCCTTTGTAAATCCTATTTCAGTTATTCCTAGTGGGCCACCTGTGCCAACAGCGGCGAGTGTGGCTGGCTTACCAAATTCCTCTTCTGTTGTACCTATTTCTGCTATTCAATCAGAAGTTGGATTCAATAATCTTGTGTCACAGCCTTCTTTGCCTGTTAAAGTCGCTCAGTATTGTAATTTGACAGCAGCAAATGGTGGCAGTGGTTCTCAATTTACCCAACCTGTTGTGGTTGGGCGTTCAGGGCAGCTTGTCTATGCTCATCCTGTTACTCATGATCTGGTTCATGGAGCTACGACTATCTCGCCTGTCTCACCACGCCCTCTGTTAAATATGAATCATGTTCAATTTCCAAAGCAACAAGGAGGCACAGTGGGTCAAGTGATGCCGCTTTGTGTTCCCCCTCCTGTCCTAGCAACTGGGGGGGCAGCAGCCCTTTGCACTACAAAACCACATTCCATTTCCGTCTCACTTTACTCGATAGATCTCTTTTCCATGGACATTGGTGGAGGAGTTCGTAAGAGGGGAAGGCCTGAAGCTCCCTTTAATGGCAATGGCGGCGTCAAGAAATCCCGGCCAGAAATGGAGTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGTTGTCCATTTGGCGAAGGATGTCATTTCTTGCATTATGTGCCTGGGGGTATAAAAGCTGTCTCTCAGATGATCAATGTCGGTACCAATCATGCAGTTCCACAAGCTCCCCGAAATACAACTTTTCCACCATCCTTTCCAGATGGCTCCTCCCCTCCGGCTGTTAAAACCCGCTTATGCAACAAGTATAATACTGCCGAAGGTTGCAAATTTGGCGAGAAATGCCACTTCGCCCATGGTGAGTGGGAGCTTGGAAAGCCAACAATCCCATCATATGAAGATCCTCGTTCCTTGGGGCAAATGCAAAGCCGGGTTAGTGGACGGGTCGAGCTACCACCTCCTGCTCATGGAGCTGCAGCCAGCTTTGGTGCCTCTGCTACTGCTAAGATTAGTATCAACGCTTCGCTCGCAGGAGCTATCATAGGAAAAAATGGTGTCAATTCTAAGCAAATTTGTCGTGTGACAGGAGCAAAACTTTCGATACGGGATCATGAATCAGATCCAAGTCTCAAGAACATTGAGCTGGAGGGCAGTTTTGATCAGATAAAACAAGCTAGTGCTATGGTTCGTGAACTTATTGTAAATGTTGGTTCTGTCTATGGGCCGCCTCCGAAAAGCATGGCACCACATGGCCCTGCCTCAGCTAGCAACTTCAAGACAAAACTGTGTGAAAACTTTGCCAAAGGATCTTGCACTTTTGGGGATCGGTGCCATTTCGCACACGGAGCCGAAGAATTACGCAAGTCTGGAATGTGA 2412 0.4527 MRFHLLGTEIISSIFARKLLEGSAELEVIEYTEMGCRSREIFSDDSSSSSSLCEALLFATMYIIGLPVDVHVKDGSVYSGIFHTASVDKGYSIILKKARRIKKGKGDANVGKQGLIDTLVIQSGDLVQVVAKGVMLPANGVSGKMTSNDEEAAEHTASSEEKPKGSLMDDKIQVDQSSGSSVVVLVYEVRGGYIFYSQTLLANGDGNDMVKGKTGDCRQKFELAEEKNVEKIQGHSLRPEVDACPAQVDFAEHGHACMTSKPSGNGSYSAPESVKANDQCFEKSNLANFAATDTTKFVDHISESHNMSTKSVPRSTESMKNSKEFKLNPAAKVFSPSFVNPISVIPSGPPVPTAASVAGLPNSSSVVPISAIQSEVGFNNLVSQPSLPVKVAQYCNLTAANGGSGSQFTQPVVVGRSGQLVYAHPVTHDLVHGATTISPVSPRPLLNMNHVQFPKQQGGTVGQVMPLCVPPPVLATGGAAALCTTKPHSISVSLYSIDLFSMDIGGGVRKRGRPEAPFNGNGGVKKSRPEMESFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMINVGTNHAVPQAPRNTTFPPSFPDGSSPPAVKTRLCNKYNTAEGCKFGEKCHFAHGEWELGKPTIPSYEDPRSLGQMQSRVSGRVELPPPAHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIRDHESDPSLKNIELEGSFDQIKQASAMVRELIVNVGSVYGPPPKSMAPHGPASASNFKTKLCENFAKGSCTFGDRCHFAHGAEELRKSGM 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0054 803 Gene3D - 601 638 - -
Lele17g0054 803 Gene3D - 765 801 - -
Lele17g0054 803 Gene3D K Homology domain, type 1 674 747 IPR036612 GO:0003723
Lele17g0054 803 MobiDBLite consensus disorder prediction 141 167 - -
Lele17g0054 803 FunFam Zinc finger CCCH domain-containing protein 601 638 - -
Lele17g0054 803 Pfam KH domain 680 743 IPR004088 GO:0003723
Lele17g0054 803 PANTHER ATAXIN 2-RELATED 260 473 IPR045117 GO:0003723
Lele17g0054 803 MobiDBLite consensus disorder prediction 148 167 - -
Lele17g0054 803 MobiDBLite consensus disorder prediction 511 538 - -
Lele17g0054 803 ProSiteProfiles Type-1 KH domain profile. 677 741 - -
Lele17g0054 803 SUPERFAMILY CCCH zinc finger 540 565 IPR036855 GO:0046872
Lele17g0054 803 SMART kh_6 676 746 IPR004087 GO:0003676
Lele17g0054 803 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 669 748 IPR036612 GO:0003723
Lele17g0054 803 ProSiteProfiles Zinc finger C3H1-type profile. 606 634 IPR000571 GO:0046872
Lele17g0054 803 CDD KH-I 681 741 - -
Lele17g0054 803 ProSiteProfiles Zinc finger C3H1-type profile. 539 567 IPR000571 GO:0046872
Lele17g0054 803 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 608 633 IPR000571 GO:0046872
Lele17g0054 803 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 770 794 IPR000571 GO:0046872
Lele17g0054 803 SUPERFAMILY CCCH zinc finger 605 637 IPR036855 GO:0046872
Lele17g0054 803 SUPERFAMILY CCCH zinc finger 768 799 IPR036855 GO:0046872
Lele17g0054 803 ProSiteProfiles Zinc finger C3H1-type profile. 769 796 IPR000571 GO:0046872
Lele17g0054 803 SMART c3hfinal6 769 795 IPR000571 GO:0046872
Lele17g0054 803 SMART c3hfinal6 539 566 IPR000571 GO:0046872
Lele17g0054 803 SMART c3hfinal6 606 633 IPR000571 GO:0046872
Lele17g0054 803 FunFam Zinc finger CCCH domain-containing protein 764 800 - -
Lele17g0054 803 Pfam Ataxin 2 SM domain 54 132 IPR025852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0054 Lele-ChrLele17 10379330 10396448 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele17g0054 SM-ATX 2.2e-22 CL0527