Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0040 ATGGGGCAAGCGCAATCGAAGAGCGAGCTTCTTTACCAGCAAGTCAGTTATGGGAACGTCGAAGGAATCAAAGCCCTTCATAGGGAGGGAGCAGGACTAGAGTGGGTGGATAGAGAAGGAAAGACGCCTTTGATTGTTGCTTGTATGAACCCTGAGATGTATGATGTCGCCAAAACATTGATTGAACTAGGTGCCAATGTCAATGCATATCGTCCGGGACGACATGCTGGCACTCCATTGCATCATGCAGCTAAAAGAGGCCTTGAAAGTATTGTTAAGCTGCTTCTTTTGCATGGAGCTAATGCATTGGTCTTGAATGACGATTGCCAAACTGCTCTTGATGTTGCGAGGGCCAAGGGCCACAGCCATGTTGTTCGTGCTATTGAGAGCCATCTTTGCTTGTTCTCTGGTTGGCTGCGGGAGTTCCATGGACCTGGATTCTTAGAAGTAGTAGCTCCACAGTTAGTATCCAAGAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCTCGGAATATAACCAGACCCTACAAGCTGGATCTTGCCATATATTCCAGTATGCAGGATGCACAGCCACGGACAGTTATTTCTCTGTGGAAGGTCAACTTAGAAGAACCAAAGCTACACCAGTCAGATCCTTCAGTGACTATTGCTGATCCCACTACAAAAACACGCATTAAACTTGCACCTGCTAGTGAGAATGACAAGCAACAACTTAAGTGGTTCTCTGATGCATGCAAAGGAATTCCACAGGAAAATCCAGCATTTTTGCAGAGTAACATTAGAACAGCTCCTCCCTCAGCGCCATCAGCTGCAGAAGATCTAGAGATGGCTGCCGCTATCAGAGCATCCATGCAGTCTGCCATGCATGAGAGGCCACCCCTTGCAAATGCCCTGCCAAACTTTGGAGCAAGTTCTTCAAGTGGAGCAAATACAAACAAGCATAGTTCAATTGGCACGCCAAATCCGAAGACAAGTGGTAGTAGTTTACCCGCAAATGAAGGCAGACCGTTTAGCAATTCAAGTGAGCCCATTCATATCAATGATAATGAGCCAGTTTCTCAAAGTTCTAGTGGTTTGGATTTGATTCCATCAGCTCCTCCAATTGCGGATGAGAATCCGTTAGATGGCCACATTCACTATCCATCAATTGATTCAAGCCCTGTTGAAATATCATCTCCAGCAGCAGAGGAGCCACCTGAAGAAGAGAAGAAAGCTGCTGGGAGTGGCTCGTCTTGCGTGATCTGTTTAGATGCTCCAGCCGAGGGGGCATGCATACCCTGTGGCCATGTTGCCGGATGCATGTCTTGCATGAATGAGATCAAAGCAAAGAAATGGGGCTGCCCTGTTTGTCGAGCGAAGATCGATCAGGTGATAAAGATATATCACGTTTAA 1392 0.467 MGQAQSKSELLYQQVSYGNVEGIKALHREGAGLEWVDREGKTPLIVACMNPEMYDVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANALVLNDDCQTALDVARAKGHSHVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRNITRPYKLDLAIYSSMQDAQPRTVISLWKVNLEEPKLHQSDPSVTIADPTTKTRIKLAPASENDKQQLKWFSDACKGIPQENPAFLQSNIRTAPPSAPSAAEDLEMAAAIRASMQSAMHERPPLANALPNFGASSSSGANTNKHSSIGTPNPKTSGSSLPANEGRPFSNSSEPIHINDNEPVSQSSSGLDLIPSAPPIADENPLDGHIHYPSIDSSPVEISSPAAEEPPEEEKKAAGSGSSCVICLDAPAEGACIPCGHVAGCMSCMNEIKAKKWGCPVCRAKIDQVIKIYHV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0040 463 MobiDBLite consensus disorder prediction 293 405 - -
Lele17g0040 463 Pfam Zinc finger, C3HC4 type (RING finger) 410 457 - -
Lele17g0040 463 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Lele17g0040 463 Gene3D - 3 146 IPR036770 -
Lele17g0040 463 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lele17g0040 463 SMART ring_2 412 450 IPR001841 -
Lele17g0040 463 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lele17g0040 463 SMART ANK_2a 108 137 IPR002110 GO:0005515
Lele17g0040 463 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lele17g0040 463 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Lele17g0040 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Lele17g0040 463 PANTHER ROLLING PEBBLES, ISOFORM B 19 246 - -
Lele17g0040 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 462 IPR013083 -
Lele17g0040 463 SUPERFAMILY RING/U-box 411 457 - -
Lele17g0040 463 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lele17g0040 463 MobiDBLite consensus disorder prediction 299 361 - -
Lele17g0040 463 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Lele17g0040 463 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0040 Lele-ChrLele17 8404091 8408228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0040 406 460 C3H Transcription Factor Family AT3G06140 36.364 4.62e-09 56.2