Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0010 ATGCAAAGGGCACTTTTGTCTAACCAAAGTTACAGCCCATACACACAAACGCATCGGGTTAACGATTTAGCGTGTAGGACTTGTCCTCTGGCAATGGATGGATGGGGATGTGATACAAAGCAAAGTCGAGAAAAAGCAGCGATTTCTGTCACTGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGGTTCACCTGGAGTTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAAGTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCCTTGTGGATCTTTTGCTTCGTGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCCATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACTGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATATCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCGGATCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCGGTCTACAACACAGATCTTCCATCAAATGCAGCTCCGAATGAAAGGGTTCAAGCGTCAAATGGGTATCTTGGTGGCATCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATACTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGGTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATAGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAACAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGAAACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGCTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAGTTGAAGTTGCAACATTGAAGGATACCTTGGGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGTGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCAACAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCTACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCTCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAACAGAGTGAACCGAATAGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAGAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATGCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTGTGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATTGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 3384 0.4341 MQRALLSNQSYSPYTQTHRVNDLACRTCPLAMDGWGCDTKQSREKAAISVTGREFCSLSFKRGGDALDLTVVHLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRLKWWEKISGNSCKIHQHYYQCIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFVTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDILEQNPIHEDDYAPEALEPSPDREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNAAPNERVQASNGYLGGIFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDTFRKHEMHCRFKQKPPWPWVAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKQRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMETDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSVEVATLKDTLGGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFNNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLLHLLRGRKILIVDDNRVNRIVAAGALKKYGADVVCVNSGEDAIAMLKPPHQFDACFMDMQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAVTADVIQATHEECLKCGMDGYVSKPFEAEQLYWEVSRFFQSTS 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0010 1127 SUPERFAMILY CheY-like 837 965 IPR011006 -
Lele17g0010 1127 PANTHER TWO-COMPONENT HISTIDINE KINASE 190 1116 - -
Lele17g0010 1127 Pfam His Kinase A (phospho-acceptor) domain 542 607 IPR003661 GO:0000155|GO:0007165
Lele17g0010 1127 Gene3D - 207 258 - -
Lele17g0010 1127 CDD HATPase_EvgS-ArcB-TorS-like 659 812 - -
Lele17g0010 1127 Gene3D - 834 966 - -
Lele17g0010 1127 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 596 809 IPR036890 -
Lele17g0010 1127 SMART REC_2 989 1119 IPR001789 GO:0000160
Lele17g0010 1127 CDD PRTases_typeI 943 1018 IPR000836 -
Lele17g0010 1127 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 529 608 IPR036097 GO:0000155|GO:0007165
Lele17g0010 1127 Gene3D - 510 605 - -
Lele17g0010 1127 SMART HKATPase_4 654 814 IPR003594 -
Lele17g0010 1127 SMART HisKA_10 542 607 IPR003661 GO:0000155|GO:0007165
Lele17g0010 1127 FunFam Histidine kinase 4 259 488 - -
Lele17g0010 1127 PRINTS Bacterial sensor protein C-terminal signature 739 753 IPR004358 GO:0016310|GO:0016772
Lele17g0010 1127 PRINTS Bacterial sensor protein C-terminal signature 757 767 IPR004358 GO:0016310|GO:0016772
Lele17g0010 1127 PRINTS Bacterial sensor protein C-terminal signature 774 792 IPR004358 GO:0016310|GO:0016772
Lele17g0010 1127 PRINTS Bacterial sensor protein C-terminal signature 798 811 IPR004358 GO:0016310|GO:0016772
Lele17g0010 1127 Pfam Response regulator receiver domain 991 1116 IPR001789 GO:0000160
Lele17g0010 1127 ProSiteProfiles Response regulatory domain profile. 842 964 IPR001789 GO:0000160
Lele17g0010 1127 Gene3D - 606 816 IPR036890 -
Lele17g0010 1127 SUPERFAMILY CheY-like 986 1123 IPR011006 -
Lele17g0010 1127 SMART CHASE_2 255 456 IPR006189 -
Lele17g0010 1127 ProSiteProfiles CHASE domain profile. 255 481 IPR006189 -
Lele17g0010 1127 CDD REC_hyHK_CKI1_RcsC-like 991 1116 - -
Lele17g0010 1127 FunFam Histidine kinase 4 514 605 - -
Lele17g0010 1127 Pfam CHASE domain 258 454 IPR006189 -
Lele17g0010 1127 Coils Coil 519 539 - -
Lele17g0010 1127 CDD HisKA 542 603 IPR003661 GO:0000155|GO:0007165
Lele17g0010 1127 Gene3D - 984 1126 - -
Lele17g0010 1127 ProSiteProfiles Response regulatory domain profile. 990 1123 IPR001789 GO:0000160
Lele17g0010 1127 ProSiteProfiles Histidine kinase domain profile. 549 814 IPR005467 -
Lele17g0010 1127 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 654 811 IPR003594 -
Lele17g0010 1127 Gene3D CHASE domain 259 488 IPR042240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0010 Lele-ChrLele17 1109540 1116341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0010 99 1127 Miscellaneous Gene Families AT1G27320 67.176 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele17g0010 CHASE 2.2e-36 CL0165