Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0008 ATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGTTCAAGTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGAGTATTGGGTCCAAGAAAGTTCGGAGAACTCTATGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACAGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCAGTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGTTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCAGTCTACAACACAGATCTTCCATCAAATGCAACCCCGAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATGTCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAACAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATACTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTCAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAATTGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCCGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATACACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGAGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCAACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCGCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAATAGTAGCAGCTGGAGCTTTAGAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATCGCTATGCTGAAGCCGCCTCATAAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAGCACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACTGTTTTTCCAATCAACTTCGTGA 2976 0.4298 METKVSFLGGGAGKMRFKWWEKISGNSCKIHQHYYQSIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVSFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKQRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHILMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSQKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIHPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCEVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRIVAAGALEKYGADVVCVNSGKDAIAMLKPPHKFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSLFFQSTS 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0008 991 Gene3D - 843 985 - -
Lele17g0008 991 Pfam Response regulator receiver domain 855 982 IPR001789 GO:0000160
Lele17g0008 991 CDD REC_hyHK_CKI1_RcsC-like 855 983 - -
Lele17g0008 991 FunFam Histidine kinase 4 123 352 - -
Lele17g0008 991 Gene3D - 374 469 - -
Lele17g0008 991 Gene3D - 70 122 - -
Lele17g0008 991 ProSiteProfiles Response regulatory domain profile. 706 828 IPR001789 GO:0000160
Lele17g0008 991 SMART HKATPase_4 518 678 IPR003594 -
Lele17g0008 991 CDD PRTases_typeI 807 882 IPR000836 -
Lele17g0008 991 CDD HATPase_EvgS-ArcB-TorS-like 523 676 - -
Lele17g0008 991 PANTHER TWO-COMPONENT HISTIDINE KINASE 53 980 - -
Lele17g0008 991 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 460 673 IPR036890 -
Lele17g0008 991 ProSiteProfiles Histidine kinase domain profile. 413 678 IPR005467 -
Lele17g0008 991 ProSiteProfiles Response regulatory domain profile. 854 987 IPR001789 GO:0000160
Lele17g0008 991 SUPERFAMILY CheY-like 701 829 IPR011006 -
Lele17g0008 991 Gene3D - 470 680 IPR036890 -
Lele17g0008 991 SUPERFAMILY CheY-like 850 984 IPR011006 -
Lele17g0008 991 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 393 472 IPR036097 GO:0000155|GO:0007165
Lele17g0008 991 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Lele17g0008 991 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Lele17g0008 991 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Lele17g0008 991 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Lele17g0008 991 SMART REC_2 853 983 IPR001789 GO:0000160
Lele17g0008 991 Gene3D CHASE domain 123 352 IPR042240 -
Lele17g0008 991 Pfam His Kinase A (phospho-acceptor) domain 406 471 IPR003661 GO:0000155|GO:0007165
Lele17g0008 991 ProSiteProfiles CHASE domain profile. 119 345 IPR006189 -
Lele17g0008 991 SMART CHASE_2 119 320 IPR006189 -
Lele17g0008 991 FunFam Histidine kinase 4 378 469 - -
Lele17g0008 991 Pfam CHASE domain 122 318 IPR006189 -
Lele17g0008 991 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 518 676 IPR003594 -
Lele17g0008 991 CDD HisKA 406 467 IPR003661 GO:0000155|GO:0007165
Lele17g0008 991 Coils Coil 383 403 - -
Lele17g0008 991 SMART HisKA_10 406 471 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0008 Lele-ChrLele17 893433 898170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0008 19 991 Miscellaneous Gene Families AT1G27320 70.306 0.0 1373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele17g0008 CHASE 4.7e-37 CL0165