Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0007 ATGCAAAGGGCACTTTTGTCTAACCAAAGTTACAGCCCATACACACAAACGCACCGGGTTAACGATTTAGCGTGTAGGACTTGTCCTCTGGCAATGGATGGATGGGGATGTGACACAAAGCAAAGTCGAGAAAAAGCAGCGATTTCTGTCACTGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGGTTCACCTGGAGTTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAAGTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCCTTGTGGATCTTTTGCTTCGTGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCCATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACTGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATATCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGATCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGCTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCGGTCTACAACACAGATCTTCCATCAAATGCAGCTCCGAATGAAAGGATTCAAGCGTCAAATGGGTATCTTGGTGGCATCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATACTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGGTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAACAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGAAACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAGTTGACGTCCATCTTATTGAAGAAGTTGTCAATTCAGTTGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGAATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATACACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCTACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCTCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAACAGAGTGAACCGAATAGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAGAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTGTGGCTGTGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATTGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 3420 0.4339 MQRALLSNQSYSPYTQTHRVNDLACRTCPLAMDGWGCDTKQSREKAAISVTGREFCSLSFKRGGDALDLTVVHLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRLKWWEKISGNSCKIHQHYYQCIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFVTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDILEQNPIHEDDYAPEALEPSPDREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNAAPNERIQASNGYLGGIFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDTFRKHEMHCRFKQKPPWPWVAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKQRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMETDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSVDVHLIEEVVNSVEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLESFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIHPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLLHLLRGRKILIVDDNRVNRIVAAGALKKYGADVVCVNSGEDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPIVAVTADVIQATHEECLKCGMDGYVSKPFEAEQLYWEVSRFFQSTS 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0007 1139 ProSiteProfiles Response regulatory domain profile. 1002 1135 IPR001789 GO:0000160
Lele17g0007 1139 Gene3D - 510 605 - -
Lele17g0007 1139 PANTHER TWO-COMPONENT HISTIDINE KINASE 190 1128 - -
Lele17g0007 1139 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 529 608 IPR036097 GO:0000155|GO:0007165
Lele17g0007 1139 CDD REC_hyHK_CKI1_RcsC-like 1003 1128 - -
Lele17g0007 1139 FunFam Histidine kinase 4 259 488 - -
Lele17g0007 1139 Pfam His Kinase A (phospho-acceptor) domain 542 607 IPR003661 GO:0000155|GO:0007165
Lele17g0007 1139 Gene3D - 606 828 IPR036890 -
Lele17g0007 1139 SMART HisKA_10 542 607 IPR003661 GO:0000155|GO:0007165
Lele17g0007 1139 Gene3D - 994 1134 - -
Lele17g0007 1139 SUPERFAMILY CheY-like 998 1135 IPR011006 -
Lele17g0007 1139 SMART CHASE_2 255 456 IPR006189 -
Lele17g0007 1139 Pfam Response regulator receiver domain 1003 1128 IPR001789 GO:0000160
Lele17g0007 1139 SMART HKATPase_4 654 826 IPR003594 -
Lele17g0007 1139 ProSiteProfiles CHASE domain profile. 255 481 IPR006189 -
Lele17g0007 1139 CDD PRTases_typeI 955 1030 IPR000836 -
Lele17g0007 1139 FunFam Histidine kinase 4 514 605 - -
Lele17g0007 1139 Pfam CHASE domain 258 454 IPR006189 -
Lele17g0007 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 654 824 IPR003594 -
Lele17g0007 1139 Gene3D CHASE domain 259 488 IPR042240 -
Lele17g0007 1139 Gene3D - 207 258 - -
Lele17g0007 1139 PRINTS Bacterial sensor protein C-terminal signature 810 823 IPR004358 GO:0016310|GO:0016772
Lele17g0007 1139 PRINTS Bacterial sensor protein C-terminal signature 751 765 IPR004358 GO:0016310|GO:0016772
Lele17g0007 1139 PRINTS Bacterial sensor protein C-terminal signature 769 779 IPR004358 GO:0016310|GO:0016772
Lele17g0007 1139 PRINTS Bacterial sensor protein C-terminal signature 786 804 IPR004358 GO:0016310|GO:0016772
Lele17g0007 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 596 821 IPR036890 -
Lele17g0007 1139 ProSiteProfiles Histidine kinase domain profile. 549 826 IPR005467 -
Lele17g0007 1139 Coils Coil 519 539 - -
Lele17g0007 1139 CDD HisKA 542 603 IPR003661 GO:0000155|GO:0007165
Lele17g0007 1139 SUPERFAMILY CheY-like 849 977 IPR011006 -
Lele17g0007 1139 SMART REC_2 1001 1131 IPR001789 GO:0000160
Lele17g0007 1139 CDD HATPase_EvgS-ArcB-TorS-like 659 824 - -
Lele17g0007 1139 ProSiteProfiles Response regulatory domain profile. 854 976 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0007 Lele-ChrLele17 744612 751450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0007 99 1139 Miscellaneous Gene Families AT1G27320 67.013 0.0 1393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele17g0007 CHASE 2.4e-36 CL0165