Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0005 ATGCGTTGTTCTTGCCCAATTTTCCTGTTTCGATATCCACCTCTCATCACAGTCACTGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGATTCAACTGGAATTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTTCTTTTGGCGCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGTTCAAGTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACAGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCAGTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGTTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCAGTCTACAACACAGATCTTCCATCAAATGCAACCCCGAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATGTCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAACAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATACTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAATTGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCCGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCCCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATACACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCCATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGAGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCAACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCGCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAATAGTAGCAGCTGGAGCTTTAGAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATCGCTATGCTGAAGCCGCCTCATAAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAGCACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACTGTTTTTCCAATCAACTTCGTGA 3288 0.4319 MRCSCPIFLFRYPPLITVTGREFCSLSFKRGGDALDLTVIQLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRFKWWEKISGNSCKIHQHYYQCIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVSFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKQRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHILMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFPSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIHPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISHGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCEVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRIVAAGALEKYGADVVCVNSGKDAIAMLKPPHKFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSLFFQSTS 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0005 1095 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 564 777 IPR036890 -
Lele17g0005 1095 CDD HATPase_EvgS-ArcB-TorS-like 627 780 - -
Lele17g0005 1095 CDD REC_hyHK_CKI1_RcsC-like 959 1087 - -
Lele17g0005 1095 CDD PRTases_typeI 911 986 IPR000836 -
Lele17g0005 1095 SUPERFAMILY CheY-like 805 933 IPR011006 -
Lele17g0005 1095 SMART CHASE_2 223 424 IPR006189 -
Lele17g0005 1095 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 497 576 IPR036097 GO:0000155|GO:0007165
Lele17g0005 1095 Pfam Response regulator receiver domain 959 1086 IPR001789 GO:0000160
Lele17g0005 1095 Gene3D - 947 1089 - -
Lele17g0005 1095 ProSiteProfiles CHASE domain profile. 223 449 IPR006189 -
Lele17g0005 1095 Gene3D CHASE domain 227 456 IPR042240 -
Lele17g0005 1095 ProSiteProfiles Response regulatory domain profile. 810 932 IPR001789 GO:0000160
Lele17g0005 1095 Gene3D - 478 573 - -
Lele17g0005 1095 PANTHER TWO-COMPONENT HISTIDINE KINASE 158 1084 - -
Lele17g0005 1095 SUPERFAMILY CheY-like 954 1088 IPR011006 -
Lele17g0005 1095 FunFam Histidine kinase 4 482 573 - -
Lele17g0005 1095 Pfam His Kinase A (phospho-acceptor) domain 510 575 IPR003661 GO:0000155|GO:0007165
Lele17g0005 1095 SMART HisKA_10 510 575 IPR003661 GO:0000155|GO:0007165
Lele17g0005 1095 Gene3D - 574 784 IPR036890 -
Lele17g0005 1095 Gene3D - 174 226 - -
Lele17g0005 1095 PRINTS Bacterial sensor protein C-terminal signature 766 779 IPR004358 GO:0016310|GO:0016772
Lele17g0005 1095 PRINTS Bacterial sensor protein C-terminal signature 725 735 IPR004358 GO:0016310|GO:0016772
Lele17g0005 1095 PRINTS Bacterial sensor protein C-terminal signature 742 760 IPR004358 GO:0016310|GO:0016772
Lele17g0005 1095 PRINTS Bacterial sensor protein C-terminal signature 707 721 IPR004358 GO:0016310|GO:0016772
Lele17g0005 1095 ProSiteProfiles Response regulatory domain profile. 958 1091 IPR001789 GO:0000160
Lele17g0005 1095 CDD HisKA 510 571 IPR003661 GO:0000155|GO:0007165
Lele17g0005 1095 ProSiteProfiles Histidine kinase domain profile. 517 782 IPR005467 -
Lele17g0005 1095 Coils Coil 487 507 - -
Lele17g0005 1095 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 780 IPR003594 -
Lele17g0005 1095 SMART REC_2 957 1087 IPR001789 GO:0000160
Lele17g0005 1095 SMART HKATPase_4 622 782 IPR003594 -
Lele17g0005 1095 FunFam Histidine kinase 4 227 456 - -
Lele17g0005 1095 Pfam CHASE domain 226 422 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0005 Lele-ChrLele17 589525 596006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0005 67 1095 Miscellaneous Gene Families AT1G27320 68.225 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele17g0005 CHASE 5.5e-37 CL0165