Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0004 ATGATAGAATCTTTATGGGTTAGTTCTGGCCTCTTTTCTTGTTCTGCGTCTTGCTTTAAACGAGGGGGAGATGCTCTGGATTTGACAGTGGTTCACCTGGAGTTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAAGTGGTGGGAGAAGATCTTTGGCAATAGTTGTAAGATTGATCAACACTACTACCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAACTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCCTTGTGGATCTTTTGCTTCGTGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGTCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCCATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACTGAGCGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATATCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGATCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATAATCTAGGAGTTATCCTCACTTTCGCGGTCTACAGCACAGATCTTCCATCAAATGCAGCTCCGAATGAAAGGATTCAAGCGTCAAATGGGTATCTTGGTGGCATCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATACTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGGTGGCAATTGCTACATCAATCGGAATCCTTGTTATTGCGCTACTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGGGATGATGGAACTTAAACAACGAGCCGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGAAACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATGCGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATCAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAGTTGTCAATTCAGTTGAAGTTGCAACATTGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGATCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGTAGACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCAACAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATTCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCTGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCTACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCTCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAACAGAGTGAACCGAATAGTAGCAGCTGGAGCTTTAAAAATGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAGAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATTGGGAAGTTTCACGGTTTTTCCAATCAACTTCGTGA 3261 0.4312 MIESLWVSSGLFSCSASCFKRGGDALDLTVVHLELARSRIQYLLELFLVPLCWLLLWMSLLYVVGFGLKLGHLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRLKWWEKIFGNSCKIDQHYYQCIGSKKVRRTLWRKLLLTWVLGWTMVSLWIFCFVTFQATEKRKETLSSMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDILEQNPIHEDDYAPEALEPSPDREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNNLGVILTFAVYSTDLPSNAAPNERIQASNGYLGGIFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDTFRKHEMHCRFKQKPPWPWVAIATSIGILVIALLVGHIFHATVNRIAKVEDDYRGMMELKQRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMETDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDMRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSVEVATLKDTLSGFPVADRCQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFNNESPSSTEGKTQQISNQPNLAFSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLLHLLRGRKILIVDDNRVNRIVAAGALKMYGADVVCVNSGEDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYWEVSRFFQSTS 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0004 1086 SUPERFAMILY CheY-like 796 924 IPR011006 -
Lele17g0004 1086 SMART HKATPase_4 613 773 IPR003594 -
Lele17g0004 1086 Gene3D - 943 1085 - -
Lele17g0004 1086 ProSiteProfiles Response regulatory domain profile. 801 923 IPR001789 GO:0000160
Lele17g0004 1086 Pfam His Kinase A (phospho-acceptor) domain 501 566 IPR003661 GO:0000155|GO:0007165
Lele17g0004 1086 FunFam Histidine kinase 4 473 564 - -
Lele17g0004 1086 PANTHER TWO-COMPONENT HISTIDINE KINASE 177 1075 - -
Lele17g0004 1086 CDD REC_hyHK_CKI1_RcsC-like 950 1075 - -
Lele17g0004 1086 ProSiteProfiles Response regulatory domain profile. 949 1082 IPR001789 GO:0000160
Lele17g0004 1086 SMART HisKA_10 501 566 IPR003661 GO:0000155|GO:0007165
Lele17g0004 1086 CDD HisKA 501 562 IPR003661 GO:0000155|GO:0007165
Lele17g0004 1086 Coils Coil 478 498 - -
Lele17g0004 1086 SMART CHASE_2 214 415 IPR006189 -
Lele17g0004 1086 Gene3D - 793 925 - -
Lele17g0004 1086 FunFam Histidine kinase 4 218 447 - -
Lele17g0004 1086 Gene3D - 166 217 - -
Lele17g0004 1086 Gene3D - 469 564 - -
Lele17g0004 1086 CDD HATPase_EvgS-ArcB-TorS-like 618 771 - -
Lele17g0004 1086 Gene3D CHASE domain 218 447 IPR042240 -
Lele17g0004 1086 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 613 770 IPR003594 -
Lele17g0004 1086 Pfam CHASE domain 217 413 IPR006189 -
Lele17g0004 1086 PRINTS Bacterial sensor protein C-terminal signature 698 712 IPR004358 GO:0016310|GO:0016772
Lele17g0004 1086 PRINTS Bacterial sensor protein C-terminal signature 716 726 IPR004358 GO:0016310|GO:0016772
Lele17g0004 1086 PRINTS Bacterial sensor protein C-terminal signature 757 770 IPR004358 GO:0016310|GO:0016772
Lele17g0004 1086 PRINTS Bacterial sensor protein C-terminal signature 733 751 IPR004358 GO:0016310|GO:0016772
Lele17g0004 1086 ProSiteProfiles CHASE domain profile. 214 440 IPR006189 -
Lele17g0004 1086 ProSiteProfiles Histidine kinase domain profile. 508 773 IPR005467 -
Lele17g0004 1086 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 488 567 IPR036097 GO:0000155|GO:0007165
Lele17g0004 1086 SMART REC_2 948 1078 IPR001789 GO:0000160
Lele17g0004 1086 Pfam Response regulator receiver domain 950 1075 IPR001789 GO:0000160
Lele17g0004 1086 SUPERFAMILY CheY-like 945 1082 IPR011006 -
Lele17g0004 1086 Gene3D - 565 775 IPR036890 -
Lele17g0004 1086 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 555 768 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0004 Lele-ChrLele17 438994 444335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0004 58 1086 Miscellaneous Gene Families AT1G27320 67.271 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele17g0004 CHASE 1.9e-36 CL0165