Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2376 ATGTATCAGCCAAACAGTGTTCCTAGTTTAAGTCTACTTGGAAGCAACTCATTGGTACATGGTCAGCAATTTGATCGTGGTGGCAGTACAATGGACCCAGTCAATGGAGGGAACAGTCTCACCAACAATCCCAATTTGAGCTCAAAGCAACGCCTACGCTGGACACATGAGCTCCATGAACGCTTTGTTGATGCTGTGGCACAGCTTGGTGGGCCTGATCGTGCCACGCCTAAAGGTGTTCTCAGGGTGATGGGTGTACAAGGCTTAACAATATATCACGTCAAAAGCCATCTGCAGAAATATCGTCTTGCCAAATACCTCCCTGACCCCTCATCTGATGGGAAAAAAGCCGACAAGAAAGAAACTGGGGATATGCTTTCCAATCTAGATGGTTCACCAGGGATGCAAATTACTGAAGCACTAAAGCTGCAAATGGAGGTGCAGAAGCGATTACATGAGCAATTAGAGGCAAAACATGAGATAAAGTCCTCTCTTTATGTGAGACAGGTTCAGAGACAGCTACAACTTCGGATTGAAGCCCAGGGTAAATACTTGAAGAAGATAATTGAAGAGCAACAAAGGCTCAGTGGCGTTTTTTCCCAAGCACCTGGCTCGGGGGATGGTGATGCAGCCTTAGTGCCCAGTGACCCCTGCCAAGACCCGGACAATAAGAATGACCCGTCAACCCCTGAGTGCCCCCTTCAGGAAAAGGCTGCTAAAGAACGTGCTCCGGTGAAGAGTCTTTCAATTGACGAATCGTTTTCATCTCACAACGAACCATTAACCCCAGATTCTGGTTGCCATGCTGGTTCCCCTACAACCAGCCTTAGAGAGAAGACGATAACAAAAAAGCAACTGGTGAGCATGGAGGGAGCATATGCTAAACCTGAAATGGTGCTTCCACATCATGTACTTGAGTCGAGCATGTCATCAAGTCAGCCATTAAACATAGTGTTTCCTACCCATGAGCAGTTTGATCCTTCACTAGAAATACCTACCAGAAGTAATGAGGAACTAGAGAAGGTTGTCGGAGGCAATCTGTGA 1044 0.4674 MYQPNSVPSLSLLGSNSLVHGQQFDRGGSTMDPVNGGNSLTNNPNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDPSSDGKKADKKETGDMLSNLDGSPGMQITEALKLQMEVQKRLHEQLEAKHEIKSSLYVRQVQRQLQLRIEAQGKYLKKIIEEQQRLSGVFSQAPGSGDGDAALVPSDPCQDPDNKNDPSTPECPLQEKAAKERAPVKSLSIDESFSSHNEPLTPDSGCHAGSPTTSLREKTITKKQLVSMEGAYAKPEMVLPHHVLESSMSSSQPLNIVFPTHEQFDPSLEIPTRSNEELEKVVGGNL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2376 347 FunFam Myb family transcription factor 48 106 - -
Lele16g2376 347 MobiDBLite consensus disorder prediction 21 48 - -
Lele16g2376 347 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Lele16g2376 347 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Lele16g2376 347 Pfam MYB-CC type transfactor, LHEQLE motif 135 162 IPR025756 -
Lele16g2376 347 Pfam MYB-CC type transfactor, LHEQLE motif 170 194 IPR025756 -
Lele16g2376 347 Coils Coil 138 158 - -
Lele16g2376 347 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Lele16g2376 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Lele16g2376 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 43 336 IPR044848 GO:0003700
Lele16g2376 347 Gene3D - 48 107 - -
Lele16g2376 347 MobiDBLite consensus disorder prediction 199 277 - -
Lele16g2376 347 MobiDBLite consensus disorder prediction 109 125 - -
Lele16g2376 347 MobiDBLite consensus disorder prediction 249 277 - -
Lele16g2376 347 MobiDBLite consensus disorder prediction 108 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2376 Lele-ChrLele16 24158249 24160427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2376 84 347 G2-like Transcription Factor Family AT2G01060 57.895 5.25e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele16g2376 Myb_DNA-binding 2.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0028 13 318379 325279 Lele16g2376 16 24158249 24160427 hybridization
Lele14g0023 14 473672 479720 Lele16g2376 16 24158249 24160427 hybridization