Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2353 ATGGATCTTTCTTTGAGTGTTGGGAGTGGTAGCCATGGATCTGGGGATGAGCAAAACACTGCAAGCTCTCATCAGACAGCTGTTACAAAGAAGCATGCTCATCGTCACACTCCTATGCAGATCATGCGACTTGAAGAGTTTTTCAAGAACTGTCCACATCCTGATGAGGAACAACGCAGGGATTTAGGCAGGGAGCTAGGGCTTGAGCCCAAACAAATCAAGTTCTGGTTCCAGAACAAGAGAACTCAAACCAAGACACTGAATGAACGGTTTGATAACAATGTTCTTCGTGCTGAGAACGAAAGAATTCAGTCTGAGAACACAGCAATCAAAGAGGTTCTTATGAGTGTAACATGCCCTGCTTGTGGTGGTCCCACCTATGGAGACCAACAACAAAGGCATACTTTGCAAAAGCTGGTTCAAGAAAATGCTTATCTCAAGCAAGAGTATGAAAAGGCGACAAGGCTCTTAGAGGAGTTTGCTGGGAAACCTGATCTGTTGATACAGAATAATTTCCTAAGCATAGGAACTCCTTCATCATCATCATTGTCATCAGAACATGGCTTGTCCCTGTCCATGTCCATGTCCATGTCCATGTCTGATGACAACACTAACATGTTGCCACTGGCAAACAAAAACAAGCAGGGAGTGATGTGGGAGACAGCCGTTAACGCCATGGAAGAACTAACGAGGCTAGTCCGTGTGGAGGAGCCACTGTGGGTCCGATCCGAAGCAGCCGGTGAGGTCGACGGAGCTTTCTTCTTCCTCCCAAATCGTGAAATCTATGAAAAGATATTCCCTAGGGCTCATCACCTCGGCAAGAAGCTCACTAATGCTCGTGTCGAATGTTCTAAAGCTTCTTGTGTCGTCAACTTGACTCCCTTCCAATTGGTTCCCATGTTTCTAGACTCTGACAAATGGGCTAATCTGTTACCAACAATTGTTGGAAAAGCAAGCACATTAAAAGTGCTTGAAGCTGGTGTGCCTGGGAGTAGGAATGGAGCCTTGCAACTGATGTATGAAGAACTTCACATGCTTACGCCCTTGGTGGCACCTCGTGAATTTGTGTTCCTTCGATACTGTTACCAAACTGACAAGACAACATGGGTGATAGCTGATGTGTCGTATGATTCCCCCGACGACATCGATTTTTCTTATAATGCCTCTTCCTGGAAGCTTCCTTCTGGTTGCATGATTCAAGAACTATCCAAGGGCTTCTCCAAGGTTACTTGGGTGCAACATGTGGAAGTGGAGCACCAAGCCCTAATAGTGCACATGCTATTTAGGAATCTTATGTTTAGTGGTGTTGCTTATGGAGCTCAACGATGGGCTGTGGCACTTGAGAGAATGTGTGAGAGAATTGGTTACACCATAAGCCGCCAGATTCCTATTGATGAAGCTACAGCTTCAGTGATGAGCATACCGGATGGAAGAAGAAGCCTGATGAAGCTAGGGCATCGAATGTTAAAGAGCTTCTGTACAGTGATAAGCATGAACAAGACTGGCAGGGAGCAAGAAGTTGCACAAATCAGTGAGGACAATGAGTTTGGTGTCAGAATTTTCGCTCGCAACAACCTCGAAAGAGGTCAGCCTCAAGGCATGACTCTAACCGCCGCCGCCCCTCTCTGGCTCTCTATTTCTCCCCATCGTGTCTTCCACTTCCTCCGTGACGTCACTCGACGATTCCAGCCTTGCCATTCTTCAAGAAGCTTGTATGGAGCCTATGGGATGTGTGCTGGTGTACGCTCCGGTGGACAACAGGACGATGAATGCGGTCATGAGAGGAGAGGACTCGACTACCATGTCGATTCTGCCGTCCGGCCTTGTGGTCGTGAGGGACAACATGGGAAGATCCGACGGCGGCAGCGGCGGCGGGTCGATACTCACAATGACTTTACAAATTATGGTGAATAG 1914 0.4739 MDLSLSVGSGSHGSGDEQNTASSHQTAVTKKHAHRHTPMQIMRLEEFFKNCPHPDEEQRRDLGRELGLEPKQIKFWFQNKRTQTKTLNERFDNNVLRAENERIQSENTAIKEVLMSVTCPACGGPTYGDQQQRHTLQKLVQENAYLKQEYEKATRLLEEFAGKPDLLIQNNFLSIGTPSSSSLSSEHGLSLSMSMSMSMSDDNTNMLPLANKNKQGVMWETAVNAMEELTRLVRVEEPLWVRSEAAGEVDGAFFFLPNREIYEKIFPRAHHLGKKLTNARVECSKASCVVNLTPFQLVPMFLDSDKWANLLPTIVGKASTLKVLEAGVPGSRNGALQLMYEELHMLTPLVAPREFVFLRYCYQTDKTTWVIADVSYDSPDDIDFSYNASSWKLPSGCMIQELSKGFSKVTWVQHVEVEHQALIVHMLFRNLMFSGVAYGAQRWAVALERMCERIGYTISRQIPIDEATASVMSIPDGRRSLMKLGHRMLKSFCTVISMNKTGREQEVAQISEDNEFGVRIFARNNLERGQPQGMTLTAAAPLWLSISPHRVFHFLRDVTRRFQPCHSSRSLYGAYGMCAGVRSGGQQDDECGHERRGLDYHVDSAVRPCGREGQHGKIRRRQRRRVDTHNDFTNYGE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2353 637 Pfam START domain 222 453 IPR002913 GO:0008289
Lele16g2353 637 Pfam Homeodomain 32 85 IPR001356 GO:0003677
Lele16g2353 637 SMART START_1 220 453 IPR002913 GO:0008289
Lele16g2353 637 SMART HOX_1 29 91 IPR001356 GO:0003677
Lele16g2353 637 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 29 563 IPR042160 -
Lele16g2353 637 FunFam Homeobox-leucine zipper protein HDG1 16 103 - -
Lele16g2353 637 MobiDBLite consensus disorder prediction 1 27 - -
Lele16g2353 637 SUPERFAMILY Homeodomain-like 24 91 IPR009057 -
Lele16g2353 637 ProSiteProfiles START domain profile. 211 456 IPR002913 GO:0008289
Lele16g2353 637 CDD homeodomain 30 85 IPR001356 GO:0003677
Lele16g2353 637 CDD START_ArGLABRA2_like 214 452 - -
Lele16g2353 637 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Lele16g2353 637 Gene3D - 13 92 - -
Lele16g2353 637 Gene3D - 269 442 IPR023393 -
Lele16g2353 637 Coils Coil 88 108 - -
Lele16g2353 637 SUPERFAMILY Bet v1-like 218 455 - -
Lele16g2353 637 MobiDBLite consensus disorder prediction 610 637 - -
Lele16g2353 637 Coils Coil 136 156 - -
Lele16g2353 637 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2353 Lele-ChrLele16 23942904 23948704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2353 25 563 Homeobox Transcription Factor Family AT1G73360 41.906 7.21e-139 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele16g2353 START 4.5e-32 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0047 13 513266 520389 Lele16g2353 16 23942904 23948704 hybridization
Lele14g0044 14 649101 654896 Lele16g2353 16 23942904 23948704 hybridization