Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2352 ATGGTTTCTTCTTTGCCTCTTTCTCAGCCTACTACTAGTCACAGCTTCTTCTCTAAAACCCAGGTTCAGTTTCCCTCTTCTCGTTCCTCTCTTTCCATCACTTTCAATCTCAAGTTTTTCATCAATTTTGCGGTTTTAAAGCAGTTGAGAGGATTTGGCCATGGCTCCCGGCGACCCAGCTTCTCATTTTGCCGCGACTCCGAAAGCAAAGTTCGACCCATCAAAGCTTCGGTTGATACAGCCCCATTCCCCTTGTTCCAACATCCCAAAGTTGAAGAGTCGTCGTCTGAGTTGGAGCCATCAGACCCAGATTTCTACAAGATAGGTTATATTCGAAGCATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCTGATGGGTTTGGTGTGTATGCTTCTAAAGATGTAGAACCTCTTCGCCGAGCCAGGGTTATTATGGAAATTCCTCTTGAATTGATGTTGACCGTGAGTCATAAGCCCCCATGGATGTTCTTCCCTGATATAATTCCAGTGGGACATCCAATATTTGATATTATCAACTCAACTAATCCAGAGAAAGATTGGCACCTAAGATTAGCATGCCTGCTGTTATATGCACTGGACTGTCAGGAAAACTTTTGGCAGTTGTATGGGGACTTCTTACCCAGTGCTGATGAATGCGCTAGCCTACTTTTGGCAACAGAGGAGGAACTTTTGGAGCTGCAAGATCCAAATCTTTCTTCTACCATCAGGTACCAGCAACGTCATGCCTTGGAATTTTGGGAGAAGAATTGGCACAATGGCGTTCCCCTTAAAATAAGGCGTCTTGCTCGTGATCATCAAAGGTTCATGTGGGCAGTAAGTACAGCACAATCACGATGCATTAACCTGAAAATGAGGCTTGGTGCACTACATCAAGATGCAAATATGCTTATTCCTTATGCTGACATGCTGAACCATTCATTCGAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGAATGCTTGAGGTTCTTATAAATGCTGGACAGAGGATTAGAAAGGGAGATGAGATGACGGTTGATTACATGAGCAGTCAAAAGAATGACATGTTTATGCAAAGATATGGCTTCTCATCATCTGTGAATCCTTGGGATGAGATCAAATTCTCTGGAGATGCGCGTATACATTTGGATTCCTTCTTGTCAGTGTTCAACATATCTGGCCTTCCTGAAGAGTATTATCATAACACTCTACTATCTAACGAGGGCAATACTTTTGTTGACGGAGCAGTCATAGCCGCAGCACGAACGCTGCCAACTTGGTCAGATGGGGATGTACCTCCAATCCCTAGTGTGGAACGGAAGGCTGTCAAGGAGTTACAAAATGAATGCCAACAAATGCTTGCAGAATTTCCCACAACCTCCAAGCAAGACCAAAAATTGCTAGGCAAGTACAGATTGCACAGGAAATTGTTCATAGGGAAAGTCATTCAAGCTTTAGAAATCTATCAAGAGAGATTAATCTTCTGA 1494 0.4364 MVSSLPLSQPTTSHSFFSKTQVQFPSSRSSLSITFNLKFFINFAVLKQLRGFGHGSRRPSFSFCRDSESKVRPIKASVDTAPFPLFQHPKVEESSSELEPSDPDFYKIGYIRSMRAYGVEFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTVSHKPPWMFFPDIIPVGHPIFDIINSTNPEKDWHLRLACLLLYALDCQENFWQLYGDFLPSADECASLLLATEEELLELQDPNLSSTIRYQQRHALEFWEKNWHNGVPLKIRRLARDHQRFMWAVSTAQSRCINLKMRLGALHQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQRIRKGDEMTVDYMSSQKNDMFMQRYGFSSSVNPWDEIKFSGDARIHLDSFLSVFNISGLPEEYYHNTLLSNEGNTFVDGAVIAAARTLPTWSDGDVPPIPSVERKAVKELQNECQQMLAEFPTTSKQDQKLLGKYRLHRKLFIGKVIQALEIYQERLIF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2352 497 Pfam SET domain 127 350 IPR001214 GO:0005515
Lele16g2352 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 85 471 - -
Lele16g2352 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 362 489 IPR036464 -
Lele16g2352 497 ProSiteProfiles SET domain profile. 89 351 IPR001214 GO:0005515
Lele16g2352 497 Gene3D set domain protein methyltransferase, domain 1 111 365 - -
Lele16g2352 497 CDD SET_LSMT 118 365 - -
Lele16g2352 497 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 111 365 - -
Lele16g2352 497 SUPERFAMILY SET domain 126 365 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2352 Lele-ChrLele16 23902273 23911027 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele16g2352 SET 2.7e-20 No_clan