Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2348 ATGGAGGGTTTTCACCCACTTATGACTTCCTCTTCATCACCATTTGCTTACACTTTTAATCTCAGTGCGGGTTCTGCAGGCTCTGGTTCTGGTGTTTCATCTTCTTCAAGTGCATGCGCGACTCCATGGATGGACTTTAGAATATGGAGCAAGCTTCCACAGAGAATTCTTGACAGAATCTTAGCTTTCCTTCCACCACCCGCTTTTTTCAGAGCACGTTGTGTCTGCAAGAGATTCTATGGCCTCTTGTTTTCCAACAGTTTCCTTCAACTTTACCTCCAAATCTCACAACCCCACCATTGGTTCATTTTCTTCAACCTCAACAAAAGCCTCAAGAGCAGCTATATCGTCTACACTAAGAACCCTAGTTCCAGTGGTCGAAGTGGAAGTGGAAGCAGTAGTGGTGGTACTACTACTACTTCTACACACTCTTGTGAAGGGTACCTATTTGATCCTTATGAAATCTCTTGGTACCGTGTTCCATTTCCTCTTCTTCCTTCTGGTTTCTCTCCATCTTCTTCTTCCTCAGGCTTGATCTGTTTTGTTTCAGACGAAGCTGGTCCCAAGACTCTTATTCTCTCCAATCCTATACTTGGCACTATAACTCAACTAACTCCCACAATAAGACCAAGACTCTTCCCTTCCATTGGCCTAGCCATTTCCCATTCCTCCATAGATCTCACTGTTGCAGGTGACGACGTGATTTCCCCTTATGCTGTGAAAAACCTAACATCTGAAAGCTTCCATATTGACTCCAGTGGGTTTTATTCCATATGGGGGACCACATCGTCACTTCCTAGACTCTGTAGTCTTGAATCTGGTGAGATGATTCACGCAGGAGGGAGATTCTACTGCATGAACTACAGCCCTTTTAGTGTTTTATGTCACGATATTTCATCAAACACTTGGTGCAAAATCCAAGCACCAATGAGGAGATTCTTAAGGTCTCCGTGTTTGATTGAGAGCAAAGGGAAGTTACTATTAGTTGCAGCAGTTGAGAAGAGCAAGCTTAATGTTCCAAGGAGTTTAAGGGTATGGGTTCTTCAGTCTTGTGGGACAACATGGGTTGAGACAGAGAGAATGCCTCAGCAACTTTATGTGCAATTTGCAGAATTAGAAGGAGGGAATGGTTTTGATTGTGTAGGGCATGGTGAGTTTATTGTATTAATGATTAAAGGAACATATAAGGTTTTGCTGTTTGATATGTGCAGAAAGAGATGGCAATGGATTCCACCATGTCCTTACGTTGTTGCTTCAAGTGCCGGTGCTGGTTCTTCTGCTTTGCATGGCTTTGCTTATGAGCCTTCACTTGCCACCCCAGTCACTGCCCTTCTGGATCAACTAGCACTTCCATTTTAG 1359 0.4364 MEGFHPLMTSSSSPFAYTFNLSAGSAGSGSGVSSSSSACATPWMDFRIWSKLPQRILDRILAFLPPPAFFRARCVCKRFYGLLFSNSFLQLYLQISQPHHWFIFFNLNKSLKSSYIVYTKNPSSSGRSGSGSSSGGTTTTSTHSCEGYLFDPYEISWYRVPFPLLPSGFSPSSSSSGLICFVSDEAGPKTLILSNPILGTITQLTPTIRPRLFPSIGLAISHSSIDLTVAGDDVISPYAVKNLTSESFHIDSSGFYSIWGTTSSLPRLCSLESGEMIHAGGRFYCMNYSPFSVLCHDISSNTWCKIQAPMRRFLRSPCLIESKGKLLLVAAVEKSKLNVPRSLRVWVLQSCGTTWVETERMPQQLYVQFAELEGGNGFDCVGHGEFIVLMIKGTYKVLLFDMCRKRWQWIPPCPYVVASSAGAGSSALHGFAYEPSLATPVTALLDQLALPF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2348 452 PANTHER BNACNNG10540D PROTEIN 29 439 - -
Lele16g2348 452 Gene3D - 47 90 - -
Lele16g2348 452 ProSiteProfiles F-box domain profile. 46 95 IPR001810 GO:0005515
Lele16g2348 452 SUPERFAMILY F-box domain 42 120 IPR036047 GO:0005515
Lele16g2348 452 MobiDBLite consensus disorder prediction 121 141 - -
Lele16g2348 452 FunFam protein UNUSUAL FLORAL ORGANS 45 89 - -
Lele16g2348 452 Pfam F-box domain 49 82 IPR001810 GO:0005515
Lele16g2348 452 SUPERFAMILY Galactose oxidase, central domain 147 417 IPR011043 -
Lele16g2348 452 SMART fbox_2 52 92 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2348 Lele-ChrLele16 23872156 23873514 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g2348 16 23872156 23873514 Lele16g2348 16 23872156 23873514 ECH
Lele13g0052 13 583261 584607 Lele16g2348 16 23872156 23873514 hybridization
Lele14g0049 14 724679 726040 Lele16g2348 16 23872156 23873514 hybridization