Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2343 ATGACCTGTGCTACCTGCTCCAATTCCGTGGAAGCAGCTCTCAAGGCCATTGATGGTGTTCTCAGTGCCTCCGTGCTCTGCTTCAGAATAAGGCTGATGTCGTTTTCAACTCTAGATGAAGACATTAAAAATGCAATTGAAGATGCAGGATTTGAAGCAGACATATTACCTGAGACCAGTACAGTTGGACCAAAACTGCAACAAACCCTGGTTGGACAGTTCACAATTGGTGGTATGTCATGTGCAGCCTGTGTCAATTCTGTTGAAGGTATTTTGAGGAATCTTACTGGGGTCAAAAGGGTTGTTGTAGCTTTGGCAACTTCCTTGGGAGAAGTTGAATATGATCCTACTATAATTAGTAAAGATGATATAATCAATTCAATTGAAGATGCTGGTTTTGAAGCTTCATTTGTACAGAGTAGTGAGCAAGATAAAATAATTTTAGGGATTGTTGGTTTGTATGGCTTAATTGATGCACAAGTTTTAGAAGGCATGCTCAGCAGCATGAAAGGAGTAAAACAGTTTCATTTTAACCAGATATCATGTGAACTGGAAGTTCTTTTTGATCCTGAAGTTCTCAATTCTAGATCCTTAGTTGATGGGATTGAAGGAGGAAGCAATGGGAAGTTCAAACTACATGTTAGGAGCCCGTATGCAAGAATGGTCTCTAAGGATGTTGAAGAGATCACAACTATGTTTCGACTCTTTACCTCAGCCTCTTCTTATGTCTATTCTGTTAGTGCTCTTCTTTATGGCGCCCTTACTGGATTTTGGTCTCCGACATATTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGGAAGTATCTGGAATGCCTTGCAAAGGGGAAGACATCAGATGCCATCAAGAAGTTAGTAGAACTGGCCCCTGCGACAACTTTGTTGGTGGTCAAAGATAAAGGTGGTAAATTTGTTGAAGAAAGGGAACTAGATGCATTGCTCATTCAGCCTGGTGATATATTAAAGGTTCTTCCTGGTACAAAGATACCTGCTGATGGTATTGTTAAATGGGGCTCAAGTTATGTAAATGAGAGTATGGTAACTGGTGAAGCTGTGCCTGTTTCAAAGGAAGTTAATGCATCTGTTATTGGAGGTACTATAAATTTACATGGTGTCCTTCACATTCGAGCCACCAAAGTAGGAGCTGATACAGTTTTGAGTCAGATAATAAGTTTGGTAGAGACAGCCCAGATGTCCAAAGCCCCTATTCAGAAATTTGCTGATTATTCTGACCCGGTTCCTCCTTCTGAGATACCTCCTGTTCCTGATCCAGATCCCTCCCTCGATCTGCCTATTGCCCTCCGTAAAGGTTATGCTCAGAAGTACGTTGCTGGATCTCTAGGAGCATACCCTAATGAATGGCTGCCGAAAAATGGAAATCACTTTGTTTTTGGCCTTATGTTTTCAATATCCGTGGTGGTGATTGCATGTCCCTGTGCACTTGGCTTAGCAACACCAACTGCTGTCATGGTAGCAACTGGGGTTGGGGCTAAGAATGGGGTGCTAATTAAAGGAGGAGATGCCTTGGAAAAGGCTCAGATGGTGAAGTACCTAATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACGGTTGCCAAGGTATTCACAGGAATTGAACGGGGAGAGTTTCTTACATTGGTGGCTTCTGCAGAGGCTAGCAGTGAACACCCATTGGGGAAAGCAATAGTAGAGTATGCGGGCCATTTTCATTTCTTTGATGAGTCATCTGCAGCAACTGGTACCAAAGATGCTGCCAAGGAGATAAAAGCTGGATGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCCGGAAGGGGCGTCCAGTGCCTTTTACATGGGAAGCGTATTCTGGTTGGTAACAGGAAGCTAATGTTGGAAAGTAGCATAAATATCCCAACCCAAGTGGAAAATTTTGTGGTGGAGCTGGAAGAAGGTGCAAAGACAGGGATACTTGTTGCATATGGAGATAACTTGAGAACAGCTCAGGCTTTTGCCAAGGAGGTTAGGATCGAAGATGTGAGAGCAGAGGTGATGCCCGCAGGGAAGGCTGAGTTTGTTCGTTCATTCCAAAACGATGGAAGCACAGTGGCAATGGTGGGTGATGGAATTAACGACTCTCCTGCATTAGCTGCTGCAGACGTCGGCGTGGCGATTGGAGCTGGCACAGATATTGCAATAGAAGCTGCAGACTATGTACTGATGAGAAACAATCTGGAAGATGTGATAACAGCCATTGATCTCTCGAGGAAGACATTTTCTCGGATTCGATTGAACTATGTTTTTGCAATGGTTTATAATGTTGTTGCCATACCAGTTGCTGCTGGTGTTCTCTATCCTTCATTAGGGATCAAGCTGCCTCCTTGGGTTGCTGGTGCATGCATGGCTCTCTCATCTAGATAA 2439 0.4338 MTCATCSNSVEAALKAIDGVLSASVLCFRIRLMSFSTLDEDIKNAIEDAGFEADILPETSTVGPKLQQTLVGQFTIGGMSCAACVNSVEGILRNLTGVKRVVVALATSLGEVEYDPTIISKDDIINSIEDAGFEASFVQSSEQDKIILGIVGLYGLIDAQVLEGMLSSMKGVKQFHFNQISCELEVLFDPEVLNSRSLVDGIEGGSNGKFKLHVRSPYARMVSKDVEEITTMFRLFTSASSYVYSVSALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATTLLVVKDKGGKFVEERELDALLIQPGDILKVLPGTKIPADGIVKWGSSYVNESMVTGEAVPVSKEVNASVIGGTINLHGVLHIRATKVGADTVLSQIISLVETAQMSKAPIQKFADYSDPVPPSEIPPVPDPDPSLDLPIALRKGYAQKYVAGSLGAYPNEWLPKNGNHFVFGLMFSISVVVIACPCALGLATPTAVMVATGVGAKNGVLIKGGDALEKAQMVKYLIFDKTGTLTQGKATVTVAKVFTGIERGEFLTLVASAEASSEHPLGKAIVEYAGHFHFFDESSAATGTKDAAKEIKAGWLYDVSDFSALPGRGVQCLLHGKRILVGNRKLMLESSINIPTQVENFVVELEEGAKTGILVAYGDNLRTAQAFAKEVRIEDVRAEVMPAGKAEFVRSFQNDGSTVAMVGDGINDSPALAAADVGVAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMVYNVVAIPVAAGVLYPSLGIKLPPWVAGACMALSSR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2343 812 Gene3D - 535 631 IPR023299 GO:0000166
Lele16g2343 812 FunFam Copper-transporting ATPase RAN1 535 627 - -
Lele16g2343 812 ProSitePatterns Heavy-metal-associated domain. 76 105 IPR017969 GO:0046872
Lele16g2343 812 Gene3D - 284 406 - -
Lele16g2343 812 SUPERFAMILY HMA, heavy metal-associated domain 70 141 IPR036163 GO:0046872
Lele16g2343 812 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 465 793 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele16g2343 812 CDD P-type_ATPase_Cu-like 249 811 - -
Lele16g2343 812 CDD HMA 73 136 IPR006121 GO:0046872
Lele16g2343 812 Gene3D - 495 769 IPR023214 -
Lele16g2343 812 SUPERFAMILY HMA, heavy metal-associated domain 1 57 IPR036163 GO:0046872
Lele16g2343 812 FunFam Copper-exporting P-type ATPase A 68 138 - -
Lele16g2343 812 SUPERFAMILY Calcium ATPase, transduction domain A 317 402 IPR008250 -
Lele16g2343 812 ProSiteProfiles Heavy-metal-associated domain profile. 1 55 IPR006121 GO:0046872
Lele16g2343 812 ProSitePatterns E1-E2 ATPases phosphorylation site. 530 536 IPR018303 -
Lele16g2343 812 CDD HMA 1 53 IPR006121 GO:0046872
Lele16g2343 812 PRINTS H+-transporting ATPase (proton pump) signature 684 700 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele16g2343 812 PRINTS H+-transporting ATPase (proton pump) signature 712 728 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele16g2343 812 PRINTS H+-transporting ATPase (proton pump) signature 743 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele16g2343 812 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 239 667 - -
Lele16g2343 812 Gene3D - 1 55 - -
Lele16g2343 812 Gene3D - 71 137 - -
Lele16g2343 812 ProSiteProfiles Heavy-metal-associated domain profile. 71 137 IPR006121 GO:0046872
Lele16g2343 812 Pfam Heavy-metal-associated domain 74 134 IPR006121 GO:0046872
Lele16g2343 812 SUPERFAMILY HAD-like 527 811 IPR036412 -
Lele16g2343 812 SUPERFAMILY Calcium ATPase, transmembrane domain M 264 786 IPR023298 -
Lele16g2343 812 Pfam haloacid dehalogenase-like hydrolase 524 726 - -
Lele16g2343 812 PRINTS P-type cation-transporting ATPase superfamily signature 735 747 - -
Lele16g2343 812 PRINTS P-type cation-transporting ATPase superfamily signature 352 366 - -
Lele16g2343 812 PRINTS P-type cation-transporting ATPase superfamily signature 712 731 - -
Lele16g2343 812 PRINTS P-type cation-transporting ATPase superfamily signature 528 542 - -
Lele16g2343 812 FunFam Copper-transporting ATPase 1, putative 284 406 - -
Lele16g2343 812 Pfam E1-E2 ATPase 303 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2343 Lele-ChrLele16 23798999 23810788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2343 1 808 Primary Pumps ATPases AT5G44790 57.604 0.0 890