Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2277 ATGGCTTTAACTGCGTCTCCATCCTCGGCCCTAACCAACAATATAAGTGCAGCTGCAGATCCCAAAGTCGGTCTTTTGAGGGAACTGAAGAGTCACGAAATCGTCATAGATCAGCTCAACAACCTTGACTATGTCTCAATTGAGAAGGAGATTCCCTCTGAACTCTCAGAAAACATTAAATTGCTTTGGCGCAGCTCCCAGCATGATGTCGAAGATAATGCTTCTTTGGTGGATCCATTGCATCAAAAGAGAATCACTAGAATACACAAGGCATTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAACCGAGTCTGATATAACTTTAGATGAAGCCAATGCTCTCCATTATGCTGCAGCGTACTGTGATCCTAAGGTTTTCTCTGAGGTACTTAGTTTGGGTCTTACTGATGTCAATCTTTGGAATTCTCGAGGATATACCTTGCTTCATATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTTTCACTTCTTACAAAGGGGGCCCATGCATCGGAGTTGACTTTGGATGGTCAGAGTGCTGTTAGCATCAGCAGGAGGTTAACAAGGCCAAAGGATTACCATGCAAAAACAGATCAAGGGAAGGAAACAAACAAAGATCGAATGTTCTTGAAAGGGAAATGTTGA 654 0.4251 MALTASPSSALTNNISAAADPKVGLLRELKSHEIVIDQLNNLDYVSIEKEIPSELSENIKLLWRSSQHDVEDNASLVDPLHQKRITRIHKALDSDDVELVKLLLTESDITLDEANALHYAAAYCDPKVFSEVLSLGLTDVNLWNSRGYTLLHIAAMRKEPSIIVSLLTKGAHASELTLDGQSAVSISRRLTRPKDYHAKTDQGKETNKDRMFLKGKC 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2277 217 PANTHER REGULATORY PROTEIN NPR3 28 211 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele16g2277 217 FunFam regulatory protein NPR3-like 80 215 - -
Lele16g2277 217 SUPERFAMILY Ankyrin repeat 76 188 IPR036770 -
Lele16g2277 217 SMART ANK_2a 112 142 IPR002110 GO:0005515
Lele16g2277 217 SMART ANK_2a 83 111 IPR002110 GO:0005515
Lele16g2277 217 SMART ANK_2a 146 178 IPR002110 GO:0005515
Lele16g2277 217 Pfam Ankyrin repeats (3 copies) 89 173 IPR002110 GO:0005515
Lele16g2277 217 ProSiteProfiles Ankyrin repeat region circular profile. 146 171 - -
Lele16g2277 217 Gene3D - 79 213 IPR036770 -
Lele16g2277 217 ProSiteProfiles Ankyrin repeat profile. 146 178 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2277 Lele-ChrLele16 22532441 22535042 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g2277 16 22532441 22535042 Lele16g2277 16 22532441 22535042 ECH
Lele13g0142 13 2343607 2348099 Lele16g2277 16 22532441 22535042 hybridization