Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2264 ATGGGCTTAAGCAAGGTTCGGTCGCGTCTGAAACCTAATCTCAGAGATAAGGCATTTGTAATGGGTGCTCCTAAGCAGAAGTGGACACAAGAAGAAGAAGCAGCACTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGAAAATGGCGCACCATACTTAAGGATCCAGAGTTTAGTAGTGTCTTGTATCTGCGGTCTAATGTAGATCTTAAGGATAAATGGAGAAATCTGAGCGTAATGGCAAATGGATGGAGCTCCCGGGACAAGTCTAGATTAGCTATTAGAAGGACACATCAGGTCTCAAAACAAGATGAAAATGCTATGACTGGCCCTTCTGTTGTTCTGAGTGATGAAGAACTTATGGATGCTAGGGCTCCTCAAGTTCCTAGAGATATGCTGCAGATTCCTGGTCCAAAGAGATCTATTGTAAGAATGGATAACCTTATAATGGAAGCAATAGCTAGCTTGAGGGAGCCTGGCGGTTCCAACAAGACAAATATTGCAGCTTACATAGAGGACCAATATTGGGCACCTCCAGATTTCCGAAGGTTGTTGTCGACAAAACTGAAATCATTGACAGCAAGTGGAAAACTGATCAAGGTGAAACGAAAATATAGGATTGCTCTTGTGCCAGCATATCCAGACCGAAGAAGAAACTCATCCTTGTTATTGACGGAAGCAAGGCAGAGAATCTCTATGAAGATGGACAAGGATGAGGCTAATGTCATCACTAAGTCTCAGATAGATTTAGAACTAGCAAAGATAAGGTCAATGACAGCCCAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAGGCAGAAGCCGCCATAGCAGAAGCTGAAGAAGCGGCAAAGGAGGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTGCAATGAAGACAATTAATGGAAGAAACACCCCAAAATTGAGGCAATCTGTAGAGCTGATGCGAGCTTGA 978 0.4468 MGLSKVRSRLKPNLRDKAFVMGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAIRRTHQVSKQDENAMTGPSVVLSDEELMDARAPQVPRDMLQIPGPKRSIVRMDNLIMEAIASLREPGGSNKTNIAAYIEDQYWAPPDFRRLLSTKLKSLTASGKLIKVKRKYRIALVPAYPDRRRNSSLLLTEARQRISMKMDKDEANVITKSQIDLELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADAAMKTINGRNTPKLRQSVELMRA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2264 325 Coils Coil 263 300 - -
Lele16g2264 325 FunFam Telomere repeat-binding factor 1 138 218 - -
Lele16g2264 325 SMART h15plus2 138 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele16g2264 325 Pfam Myb-like DNA-binding domain 25 76 IPR001005 -
Lele16g2264 325 Gene3D - 22 79 - -
Lele16g2264 325 Pfam linker histone H1 and H5 family 144 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele16g2264 325 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 140 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele16g2264 325 PANTHER SINGLE MYB HISTONE 4 21 312 IPR044597 GO:0003691
Lele16g2264 325 SMART sant 24 79 IPR001005 -
Lele16g2264 325 SUPERFAMILY Homeodomain-like 22 90 IPR009057 -
Lele16g2264 325 Gene3D - 138 215 IPR036388 -
Lele16g2264 325 CDD SANT_TRF 26 76 - -
Lele16g2264 325 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Lele16g2264 325 FunFam Telomere repeat-binding factor 1 22 78 - -
Lele16g2264 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 53 IPR017930 -
Lele16g2264 325 SUPERFAMILY "Winged helix" DNA-binding domain 137 216 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2264 Lele-ChrLele16 22248123 22255254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2264 21 316 Single Myb Histone (SMH) Gene Family AT1G49950 65.347 5.71e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele16g2264 Linker_histone 2.1e-08 CL0123