Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2263 ATGGAACAGTTGAAAATGGCTGCAGAATCTCCCTACAAGGAGATATCAGCCAGATGGGATCCAGATGAAGCATGCTTGCCTGTAATTGATGAAGCACCTGTATTTTATCCGACCGCTGAGGAGTTTGCAGACACCCTTGGTTACATAGCAAAGATACGCCCCCTGGCTGAACCACATGGCATATGTAGGATAGTCCCTCCACCTTGCTGGATTCCACCCTGCCCTCTTAAGGAGAAAGATATTTGGGAAAATGCTAAATTTTCCACCCGTATTCAGCAGATTGACTTGCTTCAGAATAGAGAGCCCATGAGAAAGAAAAGCAGGGGAAGGAAACGAAAACGTAGAAGGAACTCTAAAATGACAACCTGTAGGAGACTTGCCAATCCAGATTCAGAAGTCAATACTTCTGAATCTGAAGAAAAATTTGGATTCCAATCAGGACCAGACTTCACACTTAGAGACTTTCAACAATATGCTGCTTTTTTTAAAGAATGCTACTTCGGGATGAAGGATATCAAAGACGATGGACAAATCCGTGATAATAATTATCAGAAAGGGTTGGAGCCTTCTGTGAAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAAACAACTGATGAGGTCAAGGTGTACTATGGAGCTGACCTAGAAACTGGGGCCCTTGGAAGTGGTTTTCCCAAGGCTGATTCCTTAACGAAGAGTCACTTGGATGAGTATACGCTATCTGGCTGGAATCTGAATAACTTTCCAAGGCTTCCAGGTTCTGTGCTAAGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTGCCTTGGCTTTATGTTGGGATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCACTAAATTATTTGCACTGGGGCGATCCAAAAGTATGGTATGGAGTACCTGGTAGCCATGCTACAGCTTTGGAGGGTGCGATGAGGAAGCATATGCCTGATTTGTTTGAGGAGCAACCTAATTTACTCAATGAACTGGTCACTCAACTATCACCTTCAATTCTTAAGTCTGAGGGAGTGCCTATATTTCGCACCGTCCAGCATTCTGGGGAATTTGTAATTACCTTTCCAAGAGCATACCATGCTGGGTTCAATTGTGGTTTCAACTGTGCAGAGGCCGTGAATGTTGCTCCTGTAGATTGGTTGCTGCATGGCCAGAATGCTGTTGAACTTTATAGTAAGCAGCGCCGTAAAACCTCATTGTCACATGACAAGTTGTTATTAGGATCAGCTCAGGAAGCTATACAAGCCCTTGCAGAGGTCGTTCTTGAAGGAAAGGAAACTCCAAAAAATTTGAAATGGAAAAGTGTCTGTGGGAAAGATGGTGTTCTTACTAACGCAATTAAGATGAGGATGAAGATTGAGGAAGAGCGGATACAATGTCTTCGAACTCCCATAAAATTGGTGAAAATGGACATCAACTTTGATTTGGATAAGGAAAGAGAATGCTCTGCTTGCTTCTATGATTTGCACCTTTCTGCTGCAGGCTGCCAATGCTCTGTTGATAAATACTCTTGTCTAAGGCACTCAAATTTGTTTTGCTCATGTGGGTATGACGACAGATTTGTTCTACTTCGTTATACTATAGAGGAGCTAAAAGAGTTGGTTAGAGCATTAGAAGGAGAAATAGAAGCTATCAAGGTTTGGGCAAATAGGAACTCTGGAATGGTTTCTGTAGATTCTGGGGGAGTTTGTTTAGATAAGCCATATATGGGCAGAGACATTTGCAAAACTAAGATCAATGAAGTGGAAAGTTCATCTTCTTGTGGAAGAATCAAGAAGTCAAAACTAAATGAAGATCCTCATAGTCATGTTTCTTCAGAATTAATCCAGTCTGATTCTCAAGTGGAAAGTGCACCACAGCTCATTGTAGATAGTCATAATGCCAATGTTAATGTCAAAAGTTTGGTCATCGATAATGAAATTAAGGTTGCACGGAATTGTTATATGGGCTTAAATCTCAATGTTATATCTGGTCAAAACGAAAGTTATATCCTGCATATTGCTGATAGGCAATCAAACAAGGGTATTGGTTGTAGTGAAAAAGTCTGTTACCCAGGCTCACAAAAGAAACAAGATGATGTGGTACTTGATAGTGATGGAAATGTATCAAACATGTTTTCTCCTGTAAAGAAAGCTTACCCATCGTGTTCTACGGTTGATCGTACTTCTAGTAAATTTGATGGTGGCAAGATATCTGGGGATGATCTATTCATGCATCAGGGTATGAGAGTGATACCTGACAGTGAATGTAAAATGGAAACAATAGACAGTTTCAATGAAAGTACGTCTTTGACAAGCCAACGCTTTCTAATTCAGAAGTTTGCTACATCTGTTGAGCCTGTGAGCCTGGGCTCCATTGTGCATGGAAAGCTGTGGTGCAGTAAGCACATCATATATCCAAAAGGTTTCAAGAGTCGTGTCAAGTTCTTTAGCGTGCATAATCCATCAAGAATCTGTAGCTATGTTTCTGAAGTCCTTGATGGTGGCTTGATTGGACCTCTTTTCAAGGTTAGCGTGGAAGAACATCCAAGTGAAAGTTTCATGAACATGTCGGCAGAGAAATGCTGGGAATCAGTTCTGGAGAGAGTAAATCGTGAGATCATCAGGCGCAGAAGCCTAGGGGAAATAAGACTTCCTCCATTGGAGCTTCTGCAAAGCATCAATGGTTTAAGAATGTTCGGATTCCTTTCTCCTTCAATTATCCAGGGTATTGAAGCTCTGGATCCCAGTCATCAATGCGTAGAGTACTGGAATCACAAGGAATTAATCTCTCCTGTATCTTCCAGTAGTACAAGCGATGAAGTTAAGCTCGCCCGGGGCAGTTCAAGTAGCCTGTCTGATGACGTGGAGACCAAGTTTTTAAGTATCGATTTGACGAAGCGGGATGAAAATGACGAAGAAATGGTAGGAGCGGCGAACCACAAGTCGTTGGAAGGGATGAAACTTGTACTCGAAGGATTGTTGAAGAAAGCCAGCGTGAATGAGTTAAGCACAATGCTGAAGTTATTGGGATCAGATGATGCAGAAAGTTCTCAATGGAGAGTGGAAATTGCAGCTCTGATAGAGGAGATCCAGAAAAGCTTGTAG 3126 0.4175 MEQLKMAAESPYKEISARWDPDEACLPVIDEAPVFYPTAEEFADTLGYIAKIRPLAEPHGICRIVPPPCWIPPCPLKEKDIWENAKFSTRIQQIDLLQNREPMRKKSRGRKRKRRRNSKMTTCRRLANPDSEVNTSESEEKFGFQSGPDFTLRDFQQYAAFFKECYFGMKDIKDDGQIRDNNYQKGLEPSVKEIEGEYWRIIEQTTDEVKVYYGADLETGALGSGFPKADSLTKSHLDEYTLSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHATALEGAMRKHMPDLFEEQPNLLNELVTQLSPSILKSEGVPIFRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQRRKTSLSHDKLLLGSAQEAIQALAEVVLEGKETPKNLKWKSVCGKDGVLTNAIKMRMKIEEERIQCLRTPIKLVKMDINFDLDKERECSACFYDLHLSAAGCQCSVDKYSCLRHSNLFCSCGYDDRFVLLRYTIEELKELVRALEGEIEAIKVWANRNSGMVSVDSGGVCLDKPYMGRDICKTKINEVESSSSCGRIKKSKLNEDPHSHVSSELIQSDSQVESAPQLIVDSHNANVNVKSLVIDNEIKVARNCYMGLNLNVISGQNESYILHIADRQSNKGIGCSEKVCYPGSQKKQDDVVLDSDGNVSNMFSPVKKAYPSCSTVDRTSSKFDGGKISGDDLFMHQGMRVIPDSECKMETIDSFNESTSLTSQRFLIQKFATSVEPVSLGSIVHGKLWCSKHIIYPKGFKSRVKFFSVHNPSRICSYVSEVLDGGLIGPLFKVSVEEHPSESFMNMSAEKCWESVLERVNREIIRRRSLGEIRLPPLELLQSINGLRMFGFLSPSIIQGIEALDPSHQCVEYWNHKELISPVSSSSTSDEVKLARGSSSSLSDDVETKFLSIDLTKRDENDEEMVGAANHKSLEGMKLVLEGLLKKASVNELSTMLKLLGSDDAESSQWRVEIAALIEEIQKSL 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2263 1041 FunFam Putative lysine-specific demethylase JMJ16 789 927 - -
Lele16g2263 1041 MobiDBLite consensus disorder prediction 122 139 - -
Lele16g2263 1041 Pfam JmjC domain, hydroxylase 272 388 IPR003347 -
Lele16g2263 1041 Gene3D - 788 927 - -
Lele16g2263 1041 SUPERFAMILY Clavaminate synthase-like 236 427 - -
Lele16g2263 1041 SMART cupin_9 239 405 IPR003347 -
Lele16g2263 1041 Pfam C5HC2 zinc finger 495 547 IPR004198 -
Lele16g2263 1041 ProSiteProfiles FYR domain FYRN motif profile. 783 841 IPR003888 GO:0005634
Lele16g2263 1041 ProSiteProfiles FYR domain FYRC motif profile. 843 933 IPR003889 GO:0005634
Lele16g2263 1041 Pfam jmjN domain 33 66 IPR003349 -
Lele16g2263 1041 MobiDBLite consensus disorder prediction 104 121 - -
Lele16g2263 1041 Pfam F/Y-rich N-terminus 794 838 IPR003888 GO:0005634
Lele16g2263 1041 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 694 - -
Lele16g2263 1041 Pfam F/Y rich C-terminus 845 932 IPR003889 GO:0005634
Lele16g2263 1041 SMART fyrn_3 797 841 IPR003888 GO:0005634
Lele16g2263 1041 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Lele16g2263 1041 MobiDBLite consensus disorder prediction 98 139 - -
Lele16g2263 1041 ProSiteProfiles JmjC domain profile. 239 405 IPR003347 -
Lele16g2263 1041 SMART JmjN_1 31 72 IPR003349 -
Lele16g2263 1041 SMART fyrc_3 847 940 IPR003889 GO:0005634
Lele16g2263 1041 Gene3D Cupin 17 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2263 Lele-ChrLele16 22225576 22232774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2263 13 1022 JUMONJI Transcription Factor Family AT1G08620 42.455 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele16g2263 JmjC 1.1e-45 CL0029