Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2230 ATGGCAATTCTAGCTACCTCATCCTCATCTCCCACCATGAGCCACAGCCACGACGACACCACCACAACTGCCGCCAATGGCTGCGGTGGAACCACCCTCAAGGATGACGACAACGACAACAACAACAACAACATTAACACCGATGACAACCACCAGGATGACATGGTCATGCCCGGCTTCCGCTTCCACCCAACCGAAGAAGAACTCGTTGAGTTCTACCTTCGCCGGAAAGTCGAAGGCAAGCGTTTCAACGTCGAGCTCATAACCTTCCTCGATCTCTATCGCTACGACCCATGGGAACTTCCAGCCATGGCGGCGATCGGAGAGAAGGAGTGGTACTTCTACGTGCCAAGAGATAGGAAGTATCGGAACGGTGATCGGCCGAACAGAGTGACGACGTCGGGGTATTGGAAAGCTACAGGAGCTGATAGAATGATACGAGCAGCGGAGAGTTCGAGGTCGATTGGGTTGAAGAAAACCCTAGTTTTCTATTCAGGTAAAGCTCCAAAAGGGATTCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCGCACCATGAAACCCAACGCTTCCAGAAGGCTGAGATATCTCTGTGTCGAGTTTACAAGAGACCTGGTGTAGAAGATCATCCCTCTCTTCCCCGTAGGGTCCCAACCAGATTATCCACTTCATCATCATCAAGACCTTCTTCTTCTTCAGACAAGAATCATCATCATTATCATAATAACAAGCACAACATCAACGTTAATGTTCCAGAAATGTTTCATCCTCATCATCATCATCATCAAAACATGGGAACATTTCTGGAACAACAACCTCAGAATCATCATCATCATCATCAAGATCAGCAAATCACCAACGAAACCGATCAGGGAAGCAGTAGCAGCACCGCTGCGACAACCGCCGCCACCACTAACAACAACAACAATAATTCAGTATTAATGATGGATGATCTGAATAGGCTAGTGACTTATAATAATAATAATAACCAACAATATTTACAATACTATAACAGTGGTATCATTAATTCTATTCCTCCTCCTGAAAATCATCATCTTCATCATTACCATCATCATCATCTTCAGTTCTCTAATCTGCTACGGCAGCAGCAGCCACAAGTTCATCAACAACCAATGGTGGCTCTCAATACTTCGCTTCCCATTACCTCTTTCTCTGCTGACAGGTTGTGGGAGTGGAATCCATCATTAATCCCTGAAGCTACAAATGGAGAGTTCAGCAACATGTCCTTCAAGTAA 1257 0.4558 MAILATSSSSPTMSHSHDDTTTTAANGCGGTTLKDDDNDNNNNNINTDDNHQDDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRAAESSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETQRFQKAEISLCRVYKRPGVEDHPSLPRRVPTRLSTSSSSRPSSSSDKNHHHYHNNKHNINVNVPEMFHPHHHHHQNMGTFLEQQPQNHHHHHQDQQITNETDQGSSSSTAATTAATTNNNNNNSVLMMDDLNRLVTYNNNNNQQYLQYYNSGIINSIPPPENHHLHHYHHHHLQFSNLLRQQQPQVHQQPMVALNTSLPITSFSADRLWEWNPSLIPEATNGEFSNMSFK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2230 418 MobiDBLite consensus disorder prediction 272 312 - -
Lele16g2230 418 Pfam No apical meristem (NAM) protein 58 183 IPR003441 GO:0003677|GO:0006355
Lele16g2230 418 Gene3D NAC domain 65 207 IPR036093 GO:0003677|GO:0006355
Lele16g2230 418 MobiDBLite consensus disorder prediction 1 51 - -
Lele16g2230 418 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 54 299 - -
Lele16g2230 418 MobiDBLite consensus disorder prediction 1 55 - -
Lele16g2230 418 MobiDBLite consensus disorder prediction 286 312 - -
Lele16g2230 418 MobiDBLite consensus disorder prediction 217 231 - -
Lele16g2230 418 MobiDBLite consensus disorder prediction 206 244 - -
Lele16g2230 418 FunFam NAC domain-containing protein 35 65 207 - -
Lele16g2230 418 SUPERFAMILY NAC domain 56 204 IPR036093 GO:0003677|GO:0006355
Lele16g2230 418 ProSiteProfiles NAC domain profile. 56 204 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2230 Lele-ChrLele16 17895010 17899026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2230 55 228 NAC Transcription Factor Family AT2G02450 88.701 1.88e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele16g2230 NAM 4.3e-35 No_clan