Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2222 ATGGAAGGCTTATCGAGTCCTATACCTCGAACAGTGGAGGAGGTTTTTAGCGACTTTAAGGGCAGAAGAGCTGGAATGATTAAGGCCCTCACCACGGATGTTGAAAAGTTCTACCAGCAGTGCGACCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCCAATGAAACATGGCAAGTGAATTTGCCAGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCTCTGGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGTTATCACTTGTTGCAGTTCACAGTGATGCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCTCGATTTGGCTTTGGCAAGAATGAGAGGAAAAGGCTTTTCCAAATGATAAACGATCTCCCAACCATATTTGAAGTTGTGACGGGAAGTGCTAAGCAATTGAAGGATCAATCAGCTACCCATACCAATGGTAGCAAAAGCAAATCAAGTGGGAAGGCCAAGGGAGTGAAGATGTCACCACCACCCAAAGAAGATGATGAGAGTGGAGAAGAAGATGAGGACGAACAAGGCACAACATGTGGGGCATGTGGTGATAGCTATGCCAACGATGAATTCTGGATCTGTTGTGACGTGTGTGAGAGATGGTTCCATGGAAAATGTGTCAAAATTACTCCTGCTAAGGCTGAGCACATTAAGCAATACAAGTGCCCAAGCTGCAGCAACAAAAGGGCTAGAGTCTAG 732 0.459 MEGLSSPIPRTVEEVFSDFKGRRAGMIKALTTDVEKFYQQCDPEKENLCLYGFPNETWQVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQLKDQSATHTNGSKSKSSGKAKGVKMSPPPKEDDESGEEDEDEQGTTCGACGDSYANDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2222 243 SUPERFAMILY FYVE/PHD zinc finger 178 240 IPR011011 -
Lele16g2222 243 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Lele16g2222 243 MobiDBLite consensus disorder prediction 145 185 - -
Lele16g2222 243 PANTHER CPG BINDING PROTEIN 9 242 IPR045104 GO:0006355|GO:0042393
Lele16g2222 243 CDD PHD_AL_plant 190 239 IPR044104 -
Lele16g2222 243 FunFam PHD finger alfin-like protein 182 238 - -
Lele16g2222 243 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lele16g2222 243 Pfam PHD-finger 190 239 IPR019787 -
Lele16g2222 243 MobiDBLite consensus disorder prediction 145 162 - -
Lele16g2222 243 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Lele16g2222 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 238 IPR013083 -
Lele16g2222 243 SMART PHD_3 189 237 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2222 Lele-ChrLele16 17854923 17859051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2222 1 240 Alfin-like Transcription Factor Family AT1G14510 77.016 7.62e-129 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele16g2222 Alfin 9e-70 No_clan