Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2218 ATGCGGGTTTCTGATCTCCACTTGAAGAAGGAGCTCACTCAAATTCGCAAAGCTGCTCGTGTATTGAGGGATCCTGGTACTACTTCATCGTGGAAGTCGCCACTTAGTTCGTCGAGATCTGTCGCGGCTGCTTCTGCTTCTGCATGGAAGAACAATGGCAACTCTCAACTTCATTCTCATTTGTCTCTTCCGAGTGGAAGCAACAATGGGAAGGACAAGATGGTGTTTTTGTACAATTGGAAGAATTACAAATCGTCAAGTGAGAAACACAATGACGATGATAAAGACGAGGAAGAAGAAGGAGAAGAGTTTGATGAAGATGGTGGTGGAAATGATGGATCTTCGTCTCTTTTGGGGAGTTTCGAGGATAGCCTCAGTGATGCTCGCAATGGTTGCGATTCCAAGAGCGATACTTGCTTAGGGGTTGGTGGGAGTGCGATTCGTTCTTCCATTTTCAGGTGTAAAGATGCAAATCCTGTTGCGTTGGGCACACCATCGACCAGAAGAGCACTGGAGACTAAGAAAAAGAGTAATAAAAGCAAAATTTCCCATTTGGACAGTCTTAGAAAATATCAGCAAAGAGAAGCCAATCTTGGTAAAGCTTTAGGGAATCCCGAGCATCATATTCATCGGTCAATTGCTTATAGCCGGGAGGACTCAGTTGGGCAGTCTGATGATACTGAAAATTACTGCAATTTCGAAGATTTAACACGAAACTCAGGGCCATCTCCTTTGCTTTTGAAGCTCAAGCATAAGAATTGGTCTCGCCCAAACTCAAAGTTATTGAAAAGTAATAGAAAAGAGGATTCTCCTTATAGTACTCCTGCAATGTCTACCAGTTCTTATAATAGGTATGGTCAACATAATCCTAGTACTGTTGGATCCTGGGATGGCACGACAACCTCAGTAAATGATGCTGATGATGAAGTAGATGATCTTTTGGATTTGCCTGGTCGCCAAGGATGCGGGATACCTTGCTATTGGTCAAAGAAGACTCCAAAACATAGGGGGATGTGTAGGAGTTGCTATTCACCTTCACTTTCGGACACTCTAAGGAGGAAAGGAAGTAGCATGCTTTGTGGAAGTCAAACTATCTATCCTAGACACCGGAGATCCTTGTCAAGCTCTCACAAGCGGAGAATTTCCTCAAGGAGTGCTCTAGGTGTTCTCCCATTGCTCACTAACAGTGATCATGTTAGAGGGTCATCTCTAGGAACTGGCATGAGTGATGATGAACTTTCTACAAATTATGGGGAGCTTGATCTTGAGGGTATAAGCAGGTTGGATGGAAGAAGGTGGTCCTCAAGTTGTAGGAGTCAAGAAGGATGGAAGATTGTAGCTTTCAATGGAGAAGGGGATGATGAAGGCACTCCAGAAAATAGTAGGAGTTTCAGTCAAAAGTATAAGCCTATGTTCTTTGGTGAATTGATTGGGCAGAATATTGTGGTCCAATCACTTATAAATGCTGTTTCAAGAGGTCGAATTGCTCCTGTTTATCTTTTCCAAGGTCCACGTGGAACTGGTAAAACATCAATGGCCAGGATTTTTGCTGGTGCATTGAATTGTACAGCTCCTGATGAAACTAAACCTTGTGGCTACTGCAGGGAATGTACAAATTTCATTTCTGGGAAGAGTAGGGACCTTTTGGAAGTTGATGGAACCAATAAAAAAGGGATTGATAGAGTTAGACATCTATTGAAAAGATTATCAGTTGGGGCTTCTTCAGCCTCCTCACGATACATGGTCTTTGTTATTGATGAGTGTCATTTGTTACCCTCTAAGACTTGGTTGGCATTTCTTAAATCTCTGGAAGATCTACCTCAGCGAGTTGTGTTCATATTTATAACAACAGATCTTGACAATGTGCCTCGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAACAAAATTAAAGATGCAGATATAGTAGCACGGCTAAGGAAAATATCTGCTGAGGAGAACCTGGATGTTGAAACAGATGCGTTGGATCTTATTGCTATTAATGCAGATGGCTCACTTCGGGATGCTGAAACTATGCTAGAACAGCTGAGTTTGCTGGGAAAAAGAATTACTACTAGTCTTGTCAACGAACTTATAGGGGTTGTTTCAGATGAAAAGTTACTGGAACTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGGGCCAGGGAATTGATGGACTCTGGAGTTGATCCAATTGTTTTGATGTCCCAACTGGCAAGCCTCATAATGGACATCATTGCTGGATCATATGCTGTCATAGATGACAAACCTGGTGATTCATTTTTTGGCGGACGAAGTTGTGAGTGA 2325 0.4232 MRVSDLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAASASAWKNNGNSQLHSHLSLPSGSNNGKDKMVFLYNWKNYKSSSEKHNDDDKDEEEEGEEFDEDGGGNDGSSSLLGSFEDSLSDARNGCDSKSDTCLGVGGSAIRSSIFRCKDANPVALGTPSTRRALETKKKSNKSKISHLDSLRKYQQREANLGKALGNPEHHIHRSIAYSREDSVGQSDDTENYCNFEDLTRNSGPSPLLLKLKHKNWSRPNSKLLKSNRKEDSPYSTPAMSTSSYNRYGQHNPSTVGSWDGTTTSVNDADDEVDDLLDLPGRQGCGIPCYWSKKTPKHRGMCRSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSLSSSHKRRISSRSALGVLPLLTNSDHVRGSSLGTGMSDDELSTNYGELDLEGISRLDGRRWSSSCRSQEGWKIVAFNGEGDDEGTPENSRSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSMARIFAGALNCTAPDETKPCGYCRECTNFISGKSRDLLEVDGTNKKGIDRVRHLLKRLSVGASSASSRYMVFVIDECHLLPSKTWLAFLKSLEDLPQRVVFIFITTDLDNVPRTIQSRCQKYLFNKIKDADIVARLRKISAEENLDVETDALDLIAINADGSLRDAETMLEQLSLLGKRITTSLVNELIGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGSYAVIDDKPGDSFFGGRSCE 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2218 774 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 463 756 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lele16g2218 774 MobiDBLite consensus disorder prediction 257 298 - -
Lele16g2218 774 CDD HLD_clamp_pol_III_gamma_tau 638 701 IPR045085 -
Lele16g2218 774 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 465 748 - -
Lele16g2218 774 CDD AAA 477 635 - -
Lele16g2218 774 FunFam DNA polymerase III subunit gamma/tau 639 701 - -
Lele16g2218 774 SMART AAA_5 495 657 IPR003593 -
Lele16g2218 774 FunFam DNA polymerase III subunit gamma/tau 459 637 - -
Lele16g2218 774 Gene3D - 455 636 IPR027417 -
Lele16g2218 774 Pfam DNA polymerase III subunits gamma and tau domain III 692 752 IPR022754 GO:0003887
Lele16g2218 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 685 IPR027417 -
Lele16g2218 774 Pfam DNA polymerase III, delta subunit 478 638 - -
Lele16g2218 774 MobiDBLite consensus disorder prediction 93 109 - -
Lele16g2218 774 Gene3D - 639 701 - -
Lele16g2218 774 MobiDBLite consensus disorder prediction 268 298 - -
Lele16g2218 774 MobiDBLite consensus disorder prediction 85 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2218 Lele-ChrLele16 17818823 17821299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2218 459 761 Core DNA Replication Machinery Family AT1G21690 24.359 6.89e-16 77.8