Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2210 ATGGAACTTTCCAGTGCAGAAGGAGAGATCCCAATCCCAATAAACAGTGCCACTAGTTATGGAGGTGGAAATAATGGCCATGGCCACCTCATCCACCCCCACCATCACGAGCCTCCAATCCACCACATGATCTCTAATTCCTCAGTTCTCCCAGTAGCATCAGCGCCGCCCCATAATGGCGTCGGCGTCGGCTTCGGATCAGTCGGAGTGGGAGTAGGAGGAGTAGCCGGAGGAGGAGGAGGCCCCGAGGACATGGAGGAGGAGGAGGATGATCACCATCATGGTGGGCCCTACAACACCAGCAAGAAACCATTGGTGAAGTACAGAGAATGCTTGAAGAACCATGCAGCTTCCATGGGAGGGAATGCAACAGATGGCTGTGGAGAGTTCATGCCCAGTGGAGAAGAAGGAACACTTGAAGCTCTCACTTGTTCGGCATGCCATTGCCACAGAAATTTCCACAGAAAAGAAGTTGAAGGCCACCACCATGAACAAGATCCTCATCATCCTCATCATCTTCATCAATACCTTCATCATCCTTACAGATTATCATCAGGTACCAGAAAGCTCCTTCTTCCTCCTCCTCCTCCTGAAACCCTGGGCTACCATACACCAGCACCACCACCACCAGGTAACATCTTACCTTCTAGAATAATCATGCCCTACAATGTCATTGGGTCCCACCACTCAGACCTATCTGATGAGCAAGAAGATCATCACCATCACCATCATCATGGGATCATGAGGCCACATCATCATCACAACAAGAAGAGGTTCAGAACGAAGTTCACTCAGGAGCAGAAGGAGAAGATGCTGAACTTCGCTGAGAGAGTTGGTTGGAAGATTCAGAAACAAGAAGAATCTGTTGTGCAACAGTTTTGTCAAGAGATTGGTGTGAAGCGACGAGTTCTTAAGGTTTGGATGCACAACAACAAGCACAACCTCGCCAAAAAGAACAATAATCTCACAACAACTGACACAACTCCTCCTCCTCCTCTTCCTACAACCACTAGTACTACTTCACCACCTTAA 1032 0.4864 MELSSAEGEIPIPINSATSYGGGNNGHGHLIHPHHHEPPIHHMISNSSVLPVASAPPHNGVGVGFGSVGVGVGGVAGGGGGPEDMEEEEDDHHHGGPYNTSKKPLVKYRECLKNHAASMGGNATDGCGEFMPSGEEGTLEALTCSACHCHRNFHRKEVEGHHHEQDPHHPHHLHQYLHHPYRLSSGTRKLLLPPPPPETLGYHTPAPPPPGNILPSRIIMPYNVIGSHHSDLSDEQEDHHHHHHHGIMRPHHHHNKKRFRTKFTQEQKEKMLNFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNNLTTTDTTPPPPLPTTTSTTSPP 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2210 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 108 157 IPR006456 -
Lele16g2210 343 MobiDBLite consensus disorder prediction 1 30 - -
Lele16g2210 343 FunFam Zinc-finger homeodomain protein 2 243 317 - -
Lele16g2210 343 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 256 312 IPR006455 -
Lele16g2210 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 96 315 - -
Lele16g2210 343 MobiDBLite consensus disorder prediction 228 257 - -
Lele16g2210 343 MobiDBLite consensus disorder prediction 327 343 - -
Lele16g2210 343 Pfam ZF-HD protein dimerisation region 106 158 IPR006456 -
Lele16g2210 343 MobiDBLite consensus disorder prediction 243 257 - -
Lele16g2210 343 MobiDBLite consensus disorder prediction 315 343 - -
Lele16g2210 343 MobiDBLite consensus disorder prediction 75 101 - -
Lele16g2210 343 SUPERFAMILY Homeodomain-like 248 317 IPR009057 -
Lele16g2210 343 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 107 158 IPR006456 -
Lele16g2210 343 Gene3D - 243 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2210 Lele-ChrLele16 17691162 17692193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2210 102 323 ZF-HD Transcription Factor Family AT2G02540 54.701 2.04e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele16g2210 ZF-HD_dimer 4.5e-29 No_clan