Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2206 ATGGCTTCAAATCAGGCTTCTGGTGGAAACCATGCAGGGGCAACTAATGATGATTTGTACAAGGAATTGTGGCGTTCTTGTGCTGGTCCCCTTGTCACTCTTCCTCGTGAAGGGGAGCGAGTTTACTACTTTCCACAAGGCCACATGGAACAGCTTGAGGCCTCGATACATCAGGGGTCTGATCAGCAAATGCCTTCCTTCAATCTGCCTTCTAAGATTCTGTGTAAGGTCGTCAATGTTCATCTACGGGCTGAACCTGAAACAGATGAAGTCTATGCACAAATAACTTTGCTTCCTGAAGCTGATCAAAGTGAAGTGACAAGCCCTGATGATCCTCTGCCAGAGCCTCCTAGGTGCACAGTCCATTCCTTCTGCAAAATGCTTACTGCATCTGACACCAGCACTCATGGAGGTTTTTCTGTTCTTCGAAGGCATGCGGATGATTGTCTGCCACCCCTGGACATGTCTCAGCAGCCACCGTGGCAAGAATTAGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACATATATTTCGAGGGCAACCTAGGCGCCACTTACTGACGACGGGATGGAGTGTGTTTGTAAGCTCCAAAAAACTGGTGGCCGGTGATGCTTTTATATTCCTAAGAGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGCGGCTCATGAGACAACAGAACAATATGCCATCTTCTGTTATATCCAGTCACAGTATGCATATCGGTGTTCTTGCAACTGCATCTCATGCAATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGGACAAGCCAATCCGAGTTTATTGTTAGTGTCAACAAGTATCTTGAAGCTCGAAGTCATAAGCTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAACACACCTGTCTGGTCTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCATCAATTTTACGTCCTGATAGAGTCTCTCCTTGGGAATTAGAGCCACTTGTGGCCACCGCTCCTGTGAACGTTCAACCAACTCAAAGAAATAAGAGGGCTCGGCTTCCTGTTCTGCCTTCAACAGTACCTGATTCTTCTCCGCATGGGGCATGGAAACCATCAACTGAACCTCCATCTTTCTCCTATCGTGACTCACAACATGGACAAGATCTCTATCAATCATCGAAGTTCAATTCTACTGCAACTAACTTTCTTGGTTTTAGCGAGAAAAAGTCCCTGGGGACCGCTTCCAACAATTCCATATGTTGGTCTAACAGGGTGGAGAACTCTACAGAGCATTTTTCACCTATAGCTCTTAAAGAATCTGGGGAAAAGAAACAAGGCACTGGAAACGGTTGTAGGCTCTTTGGGATTCAGCTACTCGAGAATTCCAATGTAGAAGAAAGTATGCCAAGAGTTGCATTGTCTGAGAGGGTGGGGGATGATAGGTCAGCTCCGTGTGCAGATGCTGAGTCTGACCAGCTTTCTGAACCATCAAATGTCAATGGGTCTTATATCCCATCATTGAGTTGTGATGCTGACAAATCAAGTCTTCAGTCTCCTCAGGAATCACAAAGCAGGCAAATAAGGAGCTGCACTAAGGTTCACATGCAAGGAATGGCTGTTGGCAGGGCTGTGGATTTGTCACGGTTTGATGGATATGAGGATCTGCTTAAAAAATTGGAGGAAATGTTTGACATCAAGAGTGAGTTGGATAAATCCGCGAAGAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCATGAGTTCTGCACTGTGGTGAGGAAAATATTTATCTACACACCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGGCTTCCAATCAATGAAGTTAAACCAAGCAAGGTGGATTCCGAAGCAGCAGTCAATAGTGATGACCAGTCATCTACTGTGGGACCTAGCTGCTAA 2019 0.4532 MASNQASGGNHAGATNDDLYKELWRSCAGPLVTLPREGERVYYFPQGHMEQLEASIHQGSDQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKMLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHIGVLATASHAIATGTLFSVFYKPRTSQSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNNTPVWSDSEWRSLKVQWDEPSSILRPDRVSPWELEPLVATAPVNVQPTQRNKRARLPVLPSTVPDSSPHGAWKPSTEPPSFSYRDSQHGQDLYQSSKFNSTATNFLGFSEKKSLGTASNNSICWSNRVENSTEHFSPIALKESGEKKQGTGNGCRLFGIQLLENSNVEESMPRVALSERVGDDRSAPCADAESDQLSEPSNVNGSYIPSLSCDADKSSLQSPQESQSRQIRSCTKVHMQGMAVGRAVDLSRFDGYEDLLKKLEEMFDIKSELDKSAKKWQVVYTDNEDDMMMVGDDPWHEFCTVVRKIFIYTPEEVKKLSPKIGLPINEVKPSKVDSEAAVNSDDQSSTVGPSC 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2206 672 CDD B3_DNA 122 224 IPR003340 GO:0003677
Lele16g2206 672 SMART B3_2 124 226 IPR003340 GO:0003677
Lele16g2206 672 MobiDBLite consensus disorder prediction 361 406 - -
Lele16g2206 672 Gene3D - 121 226 IPR015300 -
Lele16g2206 672 Gene3D - 544 638 - -
Lele16g2206 672 ProSiteProfiles PB1 domain profile. 549 642 IPR000270 GO:0005515
Lele16g2206 672 FunFam Auxin response factor 122 226 - -
Lele16g2206 672 Pfam AUX/IAA family 542 639 IPR033389 -
Lele16g2206 672 MobiDBLite consensus disorder prediction 493 507 - -
Lele16g2206 672 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele16g2206 672 MobiDBLite consensus disorder prediction 652 672 - -
Lele16g2206 672 Gene3D - 287 360 - -
Lele16g2206 672 SUPERFAMILY DNA-binding pseudobarrel domain 113 253 IPR015300 -
Lele16g2206 672 MobiDBLite consensus disorder prediction 486 520 - -
Lele16g2206 672 FunFam Auxin response factor 287 359 - -
Lele16g2206 672 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Lele16g2206 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 638 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele16g2206 672 SUPERFAMILY CAD & PB1 domains 551 626 - -
Lele16g2206 672 FunFam Auxin response factor 544 638 - -
Lele16g2206 672 MobiDBLite consensus disorder prediction 657 672 - -
Lele16g2206 672 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2206 Lele-ChrLele16 17582806 17592245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2206 1 671 B3 DNA Binding Superfamily AT1G59750 69.139 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele16g2206 AUX_IAA 2.6e-12 CL0072