Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2202 ATGGATGGGAATGGAGTAGAGACGGACCTGGAGATAGAGGGTGGGGGTATGGCGATGATCATGGCGAATGATCATGGCAAACAACACGACAGGGAAGACAATACATCAGAATCAGAATCCTTTCTCCGAGAGCCTTTGCTTCTCACGAACAGTAGGATGAACAACACCTCGCAGCTCGCCATTGTTGGAGCCAATGTTTGCCCTATTGAAAGTCTTGATTACGAGTATTATCAGGCCTTTGCGGCATTCACTGTTTGTAACATGATTTTGGCCACTGCTGCGGCCATCCTTTGTGCCTACATTGCCCCTGCAGCAGCTGGGTCTGGCATACCTGAGGTGAAGGCCTACCTCAATGGTATAGATGCCCATTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATCTTTGGTTCAATTTTTGGTGTTGCTGCGGGGTTTGTTGTTGGTAAGGAAGGACCTATGTTTATTTATTTGATTGAACTTGCATTGTTTTTAAGGTGGAGGAGTGCTCTTCTGTGGCGGACTTTCTTTACAACAGCAGTAGTAGCAGTAGTGCTGAGAGGTTTCATGGACTTGTGTCGGGGTGGAAACTGTGGTCTTTTTGGGGAAGGCGGGCTGATAATGTTTGATGTTAATGAAGCAAAGCCCGCATACAGCACCCCTGACCTCCTGGCGGTTGTATTTCTGGGTGTCGTTGGAGGCATATTTGGAAGCCTTTACAATTACCTTGTGGACAAGGTAGAGCAATCTGAAGTGGACCCATTTTGCCTTGTCAATACCCGGAGAGGCCCTATATTTAAAATTGTACTTGTTGTCACAATCTCCTTTTTGACCTCATGTTGCGCATATGGCCTTCCATGGCTATCAAACTGCATCCCTTGTCCTCCTAACTTGGGGGACCAGTGCCCCACTGAAGGTCGCTCTGGCCACTACAAGAATTTCCAATGTCCACGTAACCATTACAACGATCTCGCTTCTCTCGTTTTCACTACTAATGATGATGCCATCCGCAACCTCTTTATAGCAGGCACAGACAAGGAGTTTAATCTCTCTACACTTCTAATCTTCTTTGTTGCCATATACTTCCTTGGAATCATCACTTATGGAATTGCTGTTCCCTCTGGGCTATTTATTCCTGTCATACTTGCCGGGGCCTCATATGGGCGCCTCGCTGGCACTCTTTTAAGTCCTTTCACCGTACTCGATGTTGGATTGTTTGCCCTACTCGGAGCTGCATCCTTCCTCGGCGGTACCATGAGAATGACTGTTTCTATTTGTGTCATACTCCTTGAACTCACTAATGACCTCCTCATGCTCCCACTGGTGATGCTGGTTCTTCTTGTTTCAAAGACTGTGGCAGATAGCTTCAACAAAGGTGTATATGATCAGATGGTGAAAATGAAGGGGCTGCCGTATATGGAAGCACATGCTGAACCGTACATGAGGCATTTAGTTGCAAGTGATGTTGTCTCTGGCCCTATGATAACTTTTTCTGGGATTGAAAAAGTGGGGAATATCTTCCATGCTTTAAGTATTACTAGGCACCATGGGTTTCCTGTGATCGATGAGCCTCCTTTCTCGGCTGCTCCCGAGTTGTGTGGGTTGGTTTTAAGGTCGCATCTGCTCGTGCTTCTTAAGAGGAAGAAGTTCACAAAGCAGAAGATGATGACTGGATCTACCATTCTGAGAAACTTCAAAGCGCGTGATTTCGCAAAGCCGGGATTAGGAAAGGGCCTCAAGCTCGAGGATTTGGACATTTCAAAGGAGGATATGGAAATGTATGTTGATCTCCATCCGATTACTAACACTTCACCGTATACAGTAGTGGAATCGATGTCCCTAGCAAAAGCTGCAGTTCTTTTCCGGGAGCTTGGCCTCAGGCACTTGTTGGTGGTGCCGAAGACACCTGCAGTAAGTCTCTTCTATGCATTTCATGCTGCACTAAAGAGACCTCCAATTGTTGGGATCTTGACAAGGCATGACTTCATGCCTGAGCACATTTTGGGACTATACCCTCATTTGGATCCAACAAGTAGGGGAAAGCAATAA 2049 0.4632 MDGNGVETDLEIEGGGMAMIMANDHGKQHDREDNTSESESFLREPLLLTNSRMNNTSQLAIVGANVCPIESLDYEYYQAFAAFTVCNMILATAAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMFIYLIELALFLRWRSALLWRTFFTTAVVAVVLRGFMDLCRGGNCGLFGEGGLIMFDVNEAKPAYSTPDLLAVVFLGVVGGIFGSLYNYLVDKVEQSEVDPFCLVNTRRGPIFKIVLVVTISFLTSCCAYGLPWLSNCIPCPPNLGDQCPTEGRSGHYKNFQCPRNHYNDLASLVFTTNDDAIRNLFIAGTDKEFNLSTLLIFFVAIYFLGIITYGIAVPSGLFIPVILAGASYGRLAGTLLSPFTVLDVGLFALLGAASFLGGTMRMTVSICVILLELTNDLLMLPLVMLVLLVSKTVADSFNKGVYDQMVKMKGLPYMEAHAEPYMRHLVASDVVSGPMITFSGIEKVGNIFHALSITRHHGFPVIDEPPFSAAPELCGLVLRSHLLVLLKRKKFTKQKMMTGSTILRNFKARDFAKPGLGKGLKLEDLDISKEDMEMYVDLHPITNTSPYTVVESMSLAKAAVLFRELGLRHLLVVPKTPAVSLFYAFHAALKRPPIVGILTRHDFMPEHILGLYPHLDPTSRGKQ 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2202 682 PRINTS Plant CLC chloride channel signature 177 187 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g2202 682 PRINTS Plant CLC chloride channel signature 195 202 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g2202 682 PRINTS Plant CLC chloride channel signature 324 340 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele16g2202 682 SUPERFAMILY Clc chloride channel 77 475 IPR014743 -
Lele16g2202 682 Pfam Voltage gated chloride channel 158 454 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g2202 682 Pfam Voltage gated chloride channel 91 154 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g2202 682 Gene3D Clc chloride channel 157 473 - -
Lele16g2202 682 CDD CBS_pair_voltage-gated_CLC_euk_bac 486 665 - -
Lele16g2202 682 Gene3D - 474 664 IPR046342 -
Lele16g2202 682 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 167 669 - -
Lele16g2202 682 Gene3D Clc chloride channel 58 156 - -
Lele16g2202 682 SUPERFAMILY CBS-domain pair 477 663 IPR046342 -
Lele16g2202 682 PRINTS Chloride channel signature 134 153 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g2202 682 PRINTS Chloride channel signature 404 420 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g2202 682 PRINTS Chloride channel signature 422 441 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g2202 682 PRINTS Chloride channel signature 460 474 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g2202 682 PRINTS Chloride channel signature 372 392 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele16g2202 682 PRINTS Chloride channel signature 103 120 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2202 Lele-ChrLele16 17532026 17537142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2202 4 78 Ion Channels AT5G49890 44.000 2.48e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0292 14 14362205 14367317 Lele16g2202 16 17532026 17537142 hybridization