Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2191 ATGTCTATAATCGAGACCCCGACCGTCGATTGCGTTCATCAGCGCGGTGGAGGTGGCGCCGATCACCACCATGTTCCAACCAAACGTAAATTTGATGATTTTAGGGCTTCTTTCAACGATGAGGGGGAAAATTTTGTTGATTGTTGTGATGTAGGTGAGATGGTAACGGTAAGAATGAGGAAAGACGAACCTAAAACCGAAAATTCTTGCAATTCTGAAACTTTTAATGGGTCTCTCTCAGATGTTATTACAGCCTCGTATGCTTGTTCGTCCCGGGCCGAATCGAGTCGGCCATGGTCGAAGTTGCAATTTTTCATTCGATTGATGTCAGAATCAAAAAGTATAGTACTGAAAGCTTGTCCACAAGATACAGTGAAATCGATTCATGAACGTATCCATGCAATTACGGGCATTCCGTTGTTTGAACAGAGACTGATATATATGGGTAAACAGCTACAGTGGGAACAGACTCTGGTCGAGTGTGCAATTAAGAGGGATTGTCACCTTCATTTGGTTGGGCGCATGCGCAGCACAGAGCATCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCCCTAATTTGGCGTCTCTGCAGGGGTGAAGTGGAACATGATGCCTTGAAAATTATCAAAAGCCTCATGACTGAATATTTAAAAATGACTTCTAGAATTGATAATGATTCAGCTTCCGGGTATTTCCAGATATTTTTGTCTTCATCTGCCCCTGTTGTGCTAGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGCTGATTGTTCAATTAGGCATTTTATGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTACATACTAAGTGCGCGCGTATAGTGTTGGAGTTTTGCAAATTACTTAGACGGGCAGGTCCTGAGGATCCTTTGTATCTCTCTTGTCGGAGCACCTTTGGGTCTTTATTGGAGACTGCTAGCATTTCCTATGTTTCTGAGAGTGACAAGGAATTGATTTTAATTAATGATATTCTCCCTTTTGTGCGGGAGATTGCAAATAGACTGTTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGTAGGGCCATCGTCGAGTGATGTTCGGGATTTTACTGCATTCATACTCCCTCTAAGGACTAGAATCAACAAGCAACAAGCTTTCAGGAGCCTATATTCTTCCAAGTCTGATGAAAAGCTCAATAATCTCCTTTTACCATTGGAAGAGGATAATATTCATCTTATATTTAATGAATTATTGCAAAAAATGGATCAGTGCCTTAATAAAATGCAGGAAATTTTGGCTGACAAGAGACGAGATGAGGGAGATAATCTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTAAGCTCTATGAAGGAGCTGAAGTACGATTTTGGTTGGTTTTGAGACGTCAGAGAAGTATGCTGGTTCTACTTATCACCCAGTATGCAAAGAGAACTGATGATCATCAGTGGATTCTGGAGCACAAGTGGGTAACAGATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTCCCAGATGTAAAAGAAGACTATGAGGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTCGAATACATGGCACGGGCAGAGCCTGAATCTCTACATGCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAGGCTTTATTTAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGACCAGAGGAGATTTCTCCCCAATCCTGCATCTAAGGTACATCCTCTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATTGCATTAGCTTTAATGCATAGGGTTCAAGTGGGTATCGTTTTGGATCGTGTGTTTTTCATGCAATTGGCTGGAAAGTGTATAACTTTAGAAGATATACGGGATGCTGATCCATGTTTGTACAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCTTTAGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGGTTGAGCTTTGCCCAGGTGGGAAAAGCCTTGTTGTTAATAGTAAGAACAGGGAGAAGTATGTTAATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCCCAAGGTTTTGCTGATATTCTTTGCAACCCAAGACTCCAACAGTTCTTTTTTCAAAGTCTAGATCTTGAGGATCTTGATTGGATGCTGCATGGGAGTGAGAGTGCCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTACAACGGCTATAAAGAGACAGATCCTCAAATATCTTGGTTCTGGGAGATTGTTGGGAAAATGTCAGCAGAGCAAAGGAAGGTTCTTTTGTTTTTCTGGACATCTCTAAAGTATTTACCTGCGGAAGGTTTCAAAGGTTTGTCTTCTCGTCTCTACATTTACAACACCATGGAACCCAATGATCACCTTCCTTCGTCGCACACATGCTTCTTCCGGCTATGTTTCCCGCCATATCCATCTTTCTCCGTAATGCAAGATCGTCTCCGAATCATCACACAGGAACACATTGGTTGCAGCTTTGGTACTTGGTGA 2682 0.4183 MSIIETPTVDCVHQRGGGGADHHHVPTKRKFDDFRASFNDEGENFVDCCDVGEMVTVRMRKDEPKTENSCNSETFNGSLSDVITASYACSSRAESSRPWSKLQFFIRLMSESKSIVLKACPQDTVKSIHERIHAITGIPLFEQRLIYMGKQLQWEQTLVECAIKRDCHLHLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVEHDALKIIKSLMTEYLKMTSRIDNDSASGYFQIFLSSSAPVVLVMLYMSPYVGNKECADCSIRHFMSSCRSTLSKSLHTKCARIVLEFCKLLRRAGPEDPLYLSCRSTFGSLLETASISYVSESDKELILINDILPFVREIANRLLRALDMSMESPTSVGPSSSDVRDFTAFILPLRTRINKQQAFRSLYSSKSDEKLNNLLLPLEEDNIHLIFNELLQKMDQCLNKMQEILADKRRDEGDNLYSAWSQYLSILKELYHLSKLYEGAEVRFWLVLRRQRSMLVLLITQYAKRTDDHQWILEHKWVTDFESRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYMARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDQRRFLPNPASKVHPLHLDYFTFSGRVIALALMHRVQVGIVLDRVFFMQLAGKCITLEDIRDADPCLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGKSLVVNSKNREKYVNLLIQDRFVTSISEQVSHFAQGFADILCNPRLQQFFFQSLDLEDLDWMLHGSESAISVEDWKAHTEYNGYKETDPQISWFWEIVGKMSAEQRKVLLFFWTSLKYLPAEGFKGLSSRLYIYNTMEPNDHLPSSHTCFFRLCFPPYPSFSVMQDRLRIITQEHIGCSFGTW 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2191 893 ProSiteProfiles HECT domain profile. 553 893 IPR000569 GO:0004842
Lele16g2191 893 Coils Coil 416 436 - -
Lele16g2191 893 SMART ubq_7 104 174 IPR000626 GO:0005515
Lele16g2191 893 Pfam HECT-domain (ubiquitin-transferase) 582 885 IPR000569 GO:0004842
Lele16g2191 893 Gene3D Hect, E3 ligase catalytic domains 533 760 - -
Lele16g2191 893 Gene3D Hect, E3 ligase catalytic domain 777 892 - -
Lele16g2191 893 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 653 735 - -
Lele16g2191 893 Gene3D - 96 190 - -
Lele16g2191 893 FunFam E3 ubiquitin-protein ligase UPL5 777 892 - -
Lele16g2191 893 SUPERFAMILY Ubiquitin-like 103 190 IPR029071 -
Lele16g2191 893 Gene3D Hect, E3 ligase catalytic domain 653 735 - -
Lele16g2191 893 ProSiteProfiles Ubiquitin domain profile. 102 178 IPR000626 GO:0005515
Lele16g2191 893 SMART hect_3 551 891 IPR000569 GO:0004842
Lele16g2191 893 Pfam Ubiquitin family 105 176 IPR000626 GO:0005515
Lele16g2191 893 SUPERFAMILY Hect, E3 ligase catalytic domain 528 880 IPR035983 GO:0004842
Lele16g2191 893 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 103 891 - -
Lele16g2191 893 CDD HECTc 532 891 IPR000569 GO:0004842
Lele16g2191 893 PRINTS Ubiquitin signature 134 154 IPR019956 -
Lele16g2191 893 PRINTS Ubiquitin signature 113 133 IPR019956 -
Lele16g2191 893 PRINTS Ubiquitin signature 155 176 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2191 Lele-ChrLele16 17378002 17390870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2191 102 176 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.333 1.18e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0334 13 15273189 15275039 Lele16g2191 16 17378002 17390870 hybridization