Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele16g2191 | ATGTCTATAATCGAGACCCCGACCGTCGATTGCGTTCATCAGCGCGGTGGAGGTGGCGCCGATCACCACCATGTTCCAACCAAACGTAAATTTGATGATTTTAGGGCTTCTTTCAACGATGAGGGGGAAAATTTTGTTGATTGTTGTGATGTAGGTGAGATGGTAACGGTAAGAATGAGGAAAGACGAACCTAAAACCGAAAATTCTTGCAATTCTGAAACTTTTAATGGGTCTCTCTCAGATGTTATTACAGCCTCGTATGCTTGTTCGTCCCGGGCCGAATCGAGTCGGCCATGGTCGAAGTTGCAATTTTTCATTCGATTGATGTCAGAATCAAAAAGTATAGTACTGAAAGCTTGTCCACAAGATACAGTGAAATCGATTCATGAACGTATCCATGCAATTACGGGCATTCCGTTGTTTGAACAGAGACTGATATATATGGGTAAACAGCTACAGTGGGAACAGACTCTGGTCGAGTGTGCAATTAAGAGGGATTGTCACCTTCATTTGGTTGGGCGCATGCGCAGCACAGAGCATCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCCCTAATTTGGCGTCTCTGCAGGGGTGAAGTGGAACATGATGCCTTGAAAATTATCAAAAGCCTCATGACTGAATATTTAAAAATGACTTCTAGAATTGATAATGATTCAGCTTCCGGGTATTTCCAGATATTTTTGTCTTCATCTGCCCCTGTTGTGCTAGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGCTGATTGTTCAATTAGGCATTTTATGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTACATACTAAGTGCGCGCGTATAGTGTTGGAGTTTTGCAAATTACTTAGACGGGCAGGTCCTGAGGATCCTTTGTATCTCTCTTGTCGGAGCACCTTTGGGTCTTTATTGGAGACTGCTAGCATTTCCTATGTTTCTGAGAGTGACAAGGAATTGATTTTAATTAATGATATTCTCCCTTTTGTGCGGGAGATTGCAAATAGACTGTTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGTAGGGCCATCGTCGAGTGATGTTCGGGATTTTACTGCATTCATACTCCCTCTAAGGACTAGAATCAACAAGCAACAAGCTTTCAGGAGCCTATATTCTTCCAAGTCTGATGAAAAGCTCAATAATCTCCTTTTACCATTGGAAGAGGATAATATTCATCTTATATTTAATGAATTATTGCAAAAAATGGATCAGTGCCTTAATAAAATGCAGGAAATTTTGGCTGACAAGAGACGAGATGAGGGAGATAATCTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTAAGCTCTATGAAGGAGCTGAAGTACGATTTTGGTTGGTTTTGAGACGTCAGAGAAGTATGCTGGTTCTACTTATCACCCAGTATGCAAAGAGAACTGATGATCATCAGTGGATTCTGGAGCACAAGTGGGTAACAGATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTCCCAGATGTAAAAGAAGACTATGAGGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTCGAATACATGGCACGGGCAGAGCCTGAATCTCTACATGCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAGGCTTTATTTAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGACCAGAGGAGATTTCTCCCCAATCCTGCATCTAAGGTACATCCTCTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATTGCATTAGCTTTAATGCATAGGGTTCAAGTGGGTATCGTTTTGGATCGTGTGTTTTTCATGCAATTGGCTGGAAAGTGTATAACTTTAGAAGATATACGGGATGCTGATCCATGTTTGTACAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCTTTAGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGGTTGAGCTTTGCCCAGGTGGGAAAAGCCTTGTTGTTAATAGTAAGAACAGGGAGAAGTATGTTAATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCCCAAGGTTTTGCTGATATTCTTTGCAACCCAAGACTCCAACAGTTCTTTTTTCAAAGTCTAGATCTTGAGGATCTTGATTGGATGCTGCATGGGAGTGAGAGTGCCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTACAACGGCTATAAAGAGACAGATCCTCAAATATCTTGGTTCTGGGAGATTGTTGGGAAAATGTCAGCAGAGCAAAGGAAGGTTCTTTTGTTTTTCTGGACATCTCTAAAGTATTTACCTGCGGAAGGTTTCAAAGGTTTGTCTTCTCGTCTCTACATTTACAACACCATGGAACCCAATGATCACCTTCCTTCGTCGCACACATGCTTCTTCCGGCTATGTTTCCCGCCATATCCATCTTTCTCCGTAATGCAAGATCGTCTCCGAATCATCACACAGGAACACATTGGTTGCAGCTTTGGTACTTGGTGA | 2682 | 0.4183 | MSIIETPTVDCVHQRGGGGADHHHVPTKRKFDDFRASFNDEGENFVDCCDVGEMVTVRMRKDEPKTENSCNSETFNGSLSDVITASYACSSRAESSRPWSKLQFFIRLMSESKSIVLKACPQDTVKSIHERIHAITGIPLFEQRLIYMGKQLQWEQTLVECAIKRDCHLHLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVEHDALKIIKSLMTEYLKMTSRIDNDSASGYFQIFLSSSAPVVLVMLYMSPYVGNKECADCSIRHFMSSCRSTLSKSLHTKCARIVLEFCKLLRRAGPEDPLYLSCRSTFGSLLETASISYVSESDKELILINDILPFVREIANRLLRALDMSMESPTSVGPSSSDVRDFTAFILPLRTRINKQQAFRSLYSSKSDEKLNNLLLPLEEDNIHLIFNELLQKMDQCLNKMQEILADKRRDEGDNLYSAWSQYLSILKELYHLSKLYEGAEVRFWLVLRRQRSMLVLLITQYAKRTDDHQWILEHKWVTDFESRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYMARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDQRRFLPNPASKVHPLHLDYFTFSGRVIALALMHRVQVGIVLDRVFFMQLAGKCITLEDIRDADPCLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGKSLVVNSKNREKYVNLLIQDRFVTSISEQVSHFAQGFADILCNPRLQQFFFQSLDLEDLDWMLHGSESAISVEDWKAHTEYNGYKETDPQISWFWEIVGKMSAEQRKVLLFFWTSLKYLPAEGFKGLSSRLYIYNTMEPNDHLPSSHTCFFRLCFPPYPSFSVMQDRLRIITQEHIGCSFGTW | 893 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele16g2191 | 893 | ProSiteProfiles | HECT domain profile. | 553 | 893 | IPR000569 | GO:0004842 | |
Lele16g2191 | 893 | Coils | Coil | 416 | 436 | - | - | |
Lele16g2191 | 893 | SMART | ubq_7 | 104 | 174 | IPR000626 | GO:0005515 | |
Lele16g2191 | 893 | Pfam | HECT-domain (ubiquitin-transferase) | 582 | 885 | IPR000569 | GO:0004842 | |
Lele16g2191 | 893 | Gene3D | Hect, E3 ligase catalytic domains | 533 | 760 | - | - | |
Lele16g2191 | 893 | Gene3D | Hect, E3 ligase catalytic domain | 777 | 892 | - | - | |
Lele16g2191 | 893 | FunFam | E3 ubiquitin-protein ligase UPL5 isoform A | 653 | 735 | - | - | |
Lele16g2191 | 893 | Gene3D | - | 96 | 190 | - | - | |
Lele16g2191 | 893 | FunFam | E3 ubiquitin-protein ligase UPL5 | 777 | 892 | - | - | |
Lele16g2191 | 893 | SUPERFAMILY | Ubiquitin-like | 103 | 190 | IPR029071 | - | |
Lele16g2191 | 893 | Gene3D | Hect, E3 ligase catalytic domain | 653 | 735 | - | - | |
Lele16g2191 | 893 | ProSiteProfiles | Ubiquitin domain profile. | 102 | 178 | IPR000626 | GO:0005515 | |
Lele16g2191 | 893 | SMART | hect_3 | 551 | 891 | IPR000569 | GO:0004842 | |
Lele16g2191 | 893 | Pfam | Ubiquitin family | 105 | 176 | IPR000626 | GO:0005515 | |
Lele16g2191 | 893 | SUPERFAMILY | Hect, E3 ligase catalytic domain | 528 | 880 | IPR035983 | GO:0004842 | |
Lele16g2191 | 893 | PANTHER | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE | 103 | 891 | - | - | |
Lele16g2191 | 893 | CDD | HECTc | 532 | 891 | IPR000569 | GO:0004842 | |
Lele16g2191 | 893 | PRINTS | Ubiquitin signature | 134 | 154 | IPR019956 | - | |
Lele16g2191 | 893 | PRINTS | Ubiquitin signature | 113 | 133 | IPR019956 | - | |
Lele16g2191 | 893 | PRINTS | Ubiquitin signature | 155 | 176 | IPR019956 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele16g2191 | Lele-ChrLele16 | 17378002 | 17390870 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele16g2191 | 102 | 176 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 37.333 | 1.18e-09 | 55.5 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele13g0334 | 13 | 15273189 | 15275039 | Lele16g2191 | 16 | 17378002 | 17390870 | hybridization |