Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2185 ATGATTTCTTCAAGCTTTCTCTACAGCTCGCCCGGGATCGAGCTCTGCTCAGCTCTCACAAATCTTGAGGCATGTAAAGCTGGGTTTTATGAACTTGGGGTTCAAGACCATGTGTTGCCATTGATGTCCAACAATAATGTCACCAAGTTGCTGAGCAACACTATGGCTTTAAACAAGCTTACATATGAAGAAGAAGAACCAAGTTACAAACATGAGTTCCCAACATGGGTCAAGCCCGGTGAACGGAAACTGTTGCAGAGTTCTTCTCCGTCTTCTCAGGCGAATGTCGTGGTGGTTAAAGACGGATCCGGCCACTTCACAACTGTTGTTGGGGATGGCTTTATTGCTCAAGACATGACATTTAGGAACACTGCTGGAGCTTCAAACCACCAATCTCTGGCATTACGTTCTGGTTCAGACTTATCAGTATTCTACAGATGCAGCTTTGAAGGTTACCAAGACACTTTATATGTCTTCTCTGAGAGACAATTCTACAGAGAATGTGACATTTATGGCACTGTGGATTTCATCTTTGGAAACGCAGCCGTAGTTTTCCAGAACTGCAACCTTTTGGCTAGAAACCCTCCGAACAAAGTGAACACGATCACGGCCCAAGGTCGAACCGATCCGAACCAAAACACCGGAATTTCTATCCACAATTGTAAGGTCACAGCTGCTTCAGACTTAAATCCAGTTAAAAGCTCTGTGAAAACCTATCTTGGAAGGCCATGGCAACAATATTCAAGAACTGTTTTCATGAAGAGTTTCTTAGACAGTTTGATAGATCCTTCTGGTTGGTTGGAATGGAGTGGTAACTTTGCTTTGAACACTTTGTATTACGGAGAGTACATGAACACCGGTTCAGGTTCTTCCACAGCAAATCGAGTTAAGTGGTCAGGTTATCACGTAATAACCAGTGCTTCAGAAGCTTCAAAGTTCACTGTTGGAAACTTCATTGGAGGGAATTCATGGTTGCCAGCCACCAAAGTTCCTTTCACTTCTACTTTATAG 1011 0.4342 MISSSFLYSSPGIELCSALTNLEACKAGFYELGVQDHVLPLMSNNNVTKLLSNTMALNKLTYEEEEPSYKHEFPTWVKPGERKLLQSSSPSSQANVVVVKDGSGHFTTVVGDGFIAQDMTFRNTAGASNHQSLALRSGSDLSVFYRCSFEGYQDTLYVFSERQFYRECDIYGTVDFIFGNAAVVFQNCNLLARNPPNKVNTITAQGRTDPNQNTGISIHNCKVTAASDLNPVKSSVKTYLGRPWQQYSRTVFMKSFLDSLIDPSGWLEWSGNFALNTLYYGEYMNTGSGSSTANRVKWSGYHVITSASEASKFTVGNFIGGNSWLPATKVPFTSTL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2185 336 Gene3D - 105 336 IPR012334 -
Lele16g2185 336 FunFam Pectinesterase 4 107 336 - -
Lele16g2185 336 Pfam Pectinesterase 108 322 IPR000070 GO:0030599|GO:0042545
Lele16g2185 336 PANTHER PECTINESTERASE 108 328 - -
Lele16g2185 336 ProSitePatterns Pectinesterase signature 2. 170 179 IPR033131 -
Lele16g2185 336 SUPERFAMILY Pectin lyase-like 94 335 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2185 Lele-ChrLele16 17290339 17292404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2185 15 336 Carbohydrate Esterase AT2G45220 58.442 6.98e-152 435