Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2184 ATGATAGCTTTTCGCTTATTCATATCTCTCGTACTTGTTCCCATCTTAGCTACAAGTTATTCTGCAGATGACATTAAGTTGTGGTGCAACCAAACCCCAAATCCTCAACCATGTGAGTATTTCTTGAGCAAGAGCCCAACTTATGAACTCAAAACCATCAAACACAAAGATGATTTTCTCAAGCTTTCACTTCAACTCGTCCAAGAGAGAGCTTTGATTGGCCATGCAAATACTCTTTCTCTAGAATCAAAGTGTCATAATTCTCAAGAAAAAGCTGCATGGGCTGATTGCATTGAGCTTTATGAGCACACCATTCACAGACTCAACAAAACCCTAGACCCCATCACTAAATGCTCTCAAGATGACGCTCAAACATGGCTCAGCACGGCTCTCACCAACCTCGAGACATGCCGAGCCGGGTTCTACGAGGTAGGGGTTCAAGACTACGTGTTGCCTCTGATGGCCAACAACGTCACTAAGTTGCTGAGCAACACTTTGGCTCTCAACAAAGTTCAATACCAAGGAGTAGAACCAAGTTCTAAAGAAGGGTTTCCAACATGGGTGAAGCCTGGAGATAGGAAGTTGTTGCAGTCATCATCTTCTTCATCTTCTAGGGCTAACGTTGTTGTGGCTAAAGATGGATCTGGCAAATACAAAACTGTAAGTGAGGCTATAAATGCAGCCCCAAAGAGTAGCAGTGGGAGATATGTGATATACGTGAAGGCTGGAGTTTACAACGAACAGGTAGAGATTAAGGCAAAGAATATAATGTTGGTTGGAGATGGCATTGGGAAGACTATCATCACAGGAAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGGTCAGCCACCGTTGCTGTTGTTGGGGATGCATTCATTGCTCAAGGCATCACGTTCAGAAACACTGCTGGAGCTTCAAATCACCAAGCTGTTGCACTTCGTTCTGGTTCAGACTTATCAGTATTCTACAGATGCAGCTTTGAAGGTTACCAAGACACTTTATATGTTCACTCTGAGAGACAATTCTACAGAGAATGTGACATTTATGGCACTGTCGACTTCATCTTTGGAAACGCAGCCGTTGTTTTGCAAAACAGCAACATTTTTGCCAGAAACCCTCCGAATAAAGTGAACACAATCACAGCTCAAGGTCGAACCGATCCGAACCAAAACACTGGAATTTCCATTCACAATTGTAGGGTTACAGCTGCTTCAGACTTAAAACCAGTTCAGAGCTCAGTGAAGACCTATCTTGGAAGGCCATGGAAGCAATATTCAAGAACTGTGTTTATGAAGACTTTCTTGGATAGCATGATAAACCAAGCTGGTTGGATGGAATGGAGTGGTAACTTTGCGTTAAGGACACTATATTATGGAGAGTACATGAACACAGGTTCAGGTTCTTCAACAGCAAATCGAGTTAAGTGGTCAGGTTATCACGTAATCAAAAGTGCTTCAGAAGCTTCAAAGTTCACTGTTGGAAACTTCATTGGAGGAAATTCATGGCTGCCAGCCACCAAAGTTCCTTTCACTTCTACTTTATAG 1548 0.4302 MIAFRLFISLVLVPILATSYSADDIKLWCNQTPNPQPCEYFLSKSPTYELKTIKHKDDFLKLSLQLVQERALIGHANTLSLESKCHNSQEKAAWADCIELYEHTIHRLNKTLDPITKCSQDDAQTWLSTALTNLETCRAGFYEVGVQDYVLPLMANNVTKLLSNTLALNKVQYQGVEPSSKEGFPTWVKPGDRKLLQSSSSSSSRANVVVAKDGSGKYKTVSEAINAAPKSSSGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDAFIAQGITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNSNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPVQSSVKTYLGRPWKQYSRTVFMKTFLDSMINQAGWMEWSGNFALRTLYYGEYMNTGSGSSTANRVKWSGYHVIKSASEASKFTVGNFIGGNSWLPATKVPFTSTL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2184 515 CDD PMEI-like_3 27 170 - -
Lele16g2184 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 19 171 IPR035513 -
Lele16g2184 515 SUPERFAMILY Pectin lyase-like 202 514 IPR011050 -
Lele16g2184 515 Gene3D - 201 515 IPR012334 -
Lele16g2184 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Lele16g2184 515 SMART PMEI_2 20 168 IPR006501 GO:0004857
Lele16g2184 515 FunFam Pectinesterase 201 515 - -
Lele16g2184 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Lele16g2184 515 Pfam Plant invertase/pectin methylesterase inhibitor 24 168 IPR006501 GO:0004857
Lele16g2184 515 PANTHER PECTINESTERASE 9 507 - -
Lele16g2184 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 170 IPR006501 GO:0004857
Lele16g2184 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 171 IPR035513 -
Lele16g2184 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2184 Lele-ChrLele16 17265959 17267949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2184 1 515 Carbohydrate Esterase AT2G45220 67.500 0.0 726