Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2183 ATGAGAGCTTTTCTGTTATTTGTTCCTTTATTTCTTCTTTGCTCTTCTGTTTCTGGGTATTCATGGAATGAGGTTAGGGTTTGGTGCAACCAAACCCCTAATCCTCAGCCATGTGAGTATTTCCTTAACAACAATCCCATTCACAGCCAAAAGATCATCAAACACCAACATGACTTTCTCAAGCTTTCTCTTCAACTTGCCCAAGAGCGAGCTCTCAAGGGTCATGCAAACACTCTTTCATTAGGCCCTAAGTGTAGGAACCCTCGTGAGAAAGCTGCATGGGTTGATTGCATTGAGCTTTACGAGCAAGCCATCGATAAACTCAACAAAACCCTAAACCCCAACACCAAGTTCTCACAAACAGATGCTCAAACATGGCTCAGCACTGCTCTCACCAACCTCGAGACATGCCGAGCCGGGTTCTACGAGCTCGGGGTTCAAGAATACGTGTTGCCTCTGATGGCCAACAACGTCACTAAGTTGCTGAGCAACACTTTGGCTCTCAACAAAGTTCAATACCAAGGAGTAGAACCAAGTTATAAAGAAGGGTTTCCAACATGGGTGAAGCCTGGAGATAGGAAGTTGTTGCAGTCATCATCTTCTTCATCTTCTCGGGCTAACGTTGTTGTGGCTAAAGATGGATCTGGCAAATACAAAACTGTAAGTGAGGCTATAAATGCAGCCCCAAAGAGTAGCAGTGGGAGATATGTGATATACGTGAAGGCTGGAGTTTACAACGAACAGGTAGAGATTAAGGCAAAGAATATAATGTTGGTTGGAGATGGCATTGGGAAGACTATCATCACAGGAAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGGTCAGCCACCGTTGCTGTTGTTGGGAATGGATTTATTGCTCAAGGCATCACATTTAGAAACACTGCTGGAGCTTCAAATCACCAAGCTGTTGCACTTCGTTCTGGTTCAGACTTATCAGTATTCTACAGATGCAGCTTTGAAGGTTACCAAGACACTTTATATGTTCACTCTGAGAGACAATTCTACAGAGAATGTGACATTTATGGCACTGTCGATTTCATTTTCGGAAACGCAGCCGTAGTTTTCCAGAACTGCAACATTTTTGCAAGAAACCCTCCGAACAAAGTGAACACAATCACAGCTCAAGGTCGAACCGATCCGAACCAAAACACTGGAATTTCCATCCACAATTGTAGGGTTACAGCTGCTTCAGACTTGAAACCAGTTCAAGGCTCTGTGAAAACCTATCTTGGAAGGCCATGGCAACAATATTCTCGAACTGTTTTCATGAAGACTTTCTTGGATAGCTTGATAAACCAGGCAGAGGCATATCATTACAAAATGGAATCGGATGAGATTAAGAAGGCCGGCGAAGTTTCGGAAACAAAACACACTGCCACCGATAATGAAATGAGCGACGACGAAGTTGGAGCTGGGAAGTTTTACTCCCACAGCCGCCAGAGTTCTGTTGCTGACGACGACGATGACGAAGAGAAGGCTAATATTGAATTGGGTCCGCAATGCTCCTTGAGGGAACAACTTGAGAAGGACAAGGATGATGAGAGCTTAAGGAAGTGGAAGGAACAACTTCTTGGGAGCGTTGACATCAACGCTGTTGGAGAAACCCTAGAGCCAGAGGTGAAGATTGTGAGCCTGGCAATAAAGACAAATGGGAGAGATGATATGGTGCTTCCAATACCAGAGTCTGGAAAACCTGAGGGACTCTGGTTTACTCTGAAAGAAGGAAGCCATTACAGGCTCATGTTCACTTTTCGTGTTGGTCACAACATTGTTTCTGGTCTCAAATACACCAACACTGTTTGGAAAACCGGTATCAAGGTTGACAGCGCTAAAGAGATGATTGGAACATTCAGTCCACAGGAGGAAGCTTATACACACGAAATGGCTGAAGAGACCACACCATCTGGCATGTTAGCTAGAGGCACTTATACGGCTAAAAGTAAGTTTGTAGATGATGACAACAAATGCCACTTGGAGATCAACTACACTTTTGATATCCGAAAGGAATGGAATTAA 2043 0.4425 MRAFLLFVPLFLLCSSVSGYSWNEVRVWCNQTPNPQPCEYFLNNNPIHSQKIIKHQHDFLKLSLQLAQERALKGHANTLSLGPKCRNPREKAAWVDCIELYEQAIDKLNKTLNPNTKFSQTDAQTWLSTALTNLETCRAGFYELGVQEYVLPLMANNVTKLLSNTLALNKVQYQGVEPSYKEGFPTWVKPGDRKLLQSSSSSSSRANVVVAKDGSGKYKTVSEAINAAPKSSSGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGNGFIAQGITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPVQGSVKTYLGRPWQQYSRTVFMKTFLDSLINQAEAYHYKMESDEIKKAGEVSETKHTATDNEMSDDEVGAGKFYSHSRQSSVADDDDDEEKANIELGPQCSLREQLEKDKDDESLRKWKEQLLGSVDINAVGETLEPEVKIVSLAIKTNGRDDMVLPIPESGKPEGLWFTLKEGSHYRLMFTFRVGHNIVSGLKYTNTVWKTGIKVDSAKEMIGTFSPQEEAYTHEMAEETTPSGMLARGTYTAKSKFVDDDNKCHLEINYTFDIRKEWN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2183 680 Pfam Plant invertase/pectin methylesterase inhibitor 25 168 IPR006501 GO:0004857
Lele16g2183 680 FunFam Pectinesterase 20 171 - -
Lele16g2183 680 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 170 IPR006501 GO:0004857
Lele16g2183 680 PRINTS RHO protein GDP dissociation inhibitor signature 616 631 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Lele16g2183 680 PRINTS RHO protein GDP dissociation inhibitor signature 658 675 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Lele16g2183 680 PRINTS RHO protein GDP dissociation inhibitor signature 599 615 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Lele16g2183 680 SMART complete 240 417 IPR006633 -
Lele16g2183 680 Gene3D Coagulation Factor XIII, subunit A, domain 1 501 680 IPR024792 -
Lele16g2183 680 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Lele16g2183 680 Gene3D - 201 494 IPR012334 -
Lele16g2183 680 FunFam Rho GDP-dissociation inhibitor 1 502 680 - -
Lele16g2183 680 FunFam Pectinesterase 4 204 475 - -
Lele16g2183 680 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Lele16g2183 680 PANTHER PECTINESTERASE 14 465 - -
Lele16g2183 680 SUPERFAMILY Pectin lyase-like 202 443 IPR011050 -
Lele16g2183 680 CDD PMEI-like_3 28 170 - -
Lele16g2183 680 SMART PMEI_2 20 168 IPR006501 GO:0004857
Lele16g2183 680 Pfam RHO protein GDP dissociation inhibitor 493 678 IPR000406 GO:0005094|GO:0005515|GO:0005737|GO:0007266
Lele16g2183 680 Pfam Pectinesterase 207 444 IPR000070 GO:0030599|GO:0042545
Lele16g2183 680 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 171 IPR035513 -
Lele16g2183 680 MobiDBLite consensus disorder prediction 484 510 - -
Lele16g2183 680 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 171 IPR035513 -
Lele16g2183 680 SUPERFAMILY E set domains 488 680 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2183 Lele-ChrLele16 17241975 17249981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2183 1 441 Carbohydrate Esterase AT2G45220 69.752 0.0 635