Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2162 ATGGTACACAGCCTCTCTCTCCCCATTGATTCTCCTAAGCAAATCCACGAGATTAAGGACTTTCTTCTCACTGCCAGGAGGAAAGACGCGAGGTCAGTGAAAATCAAGAGGAGCAGAGATGCTGTTAAGTTCAAAGTTCGGTGTTCCAAGTACCTCTACACACTCTCTGTGTTTGACACAGAGAAGGCTGATAAATTGAAGCAATCACTTCCTCCAGATGAACCAGTGATCACTCTTGGAAATTACTATGATTTGAAAAGTTTGTTATGTGATCTTCGCCATTGTGATCTCTTTATTATTTGCAGGTTTGAGCGTTCAAGACCTGTGAAACTACGAGTGTTGGAGTGA 348 0.4253 MVHSLSLPIDSPKQIHEIKDFLLTARRKDARSVKIKRSRDAVKFKVRCSKYLYTLSVFDTEKADKLKQSLPPDEPVITLGNYYDLKSLLCDLRHCDLFIICRFERSRPVKLRVLE 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2162 115 Pfam Ribosomal L38e protein family 12 77 IPR002675 GO:0003735|GO:0005840|GO:0006412
Lele16g2162 115 PANTHER 60S RIBOSOMAL PROTEIN L38 12 76 IPR002675 GO:0003735|GO:0005840|GO:0006412
Lele16g2162 115 FunFam 60S ribosomal protein L38 11 79 - -
Lele16g2162 115 Gene3D - 11 79 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2162 Lele-ChrLele16 16914274 16915609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2162 12 79 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 85.294 1.65e-34 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0284 13 13796715 13798197 Lele16g2162 16 16914274 16915609 hybridization
Lele14g0252 14 13603149 13604539 Lele16g2162 16 16914274 16915609 hybridization