Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2158 ATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCCGCCAACCCAGCTGCGCCGTCTGGACCTCTGGCCCCATCTGATTCTCCCGCCGTTGCTACTGCCGCAGCTAATGGTGTTACACCTAGCGCTGCCGACCCTGCTGCGAGCAATATTCCTGGCCGTCGGAGCTTCCGGCAGACGGTTTGCCGGCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCCTGCGGCTTTTTACACCAATATGACAAAGCGCGGATGCCCGTTTGCCGGTTTTTTAGATTATATGGGGAGTGTCGGGAGCAGGACTGCGTGTATAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCGAATGGTCCTGATTGCCGGTATAGGCATGCAAAAATGCCTGGACCTCCCCCTCCCGTTGAAGAAGTGCTTCAAAAGATTCAGCATTTATATTCTTATAATTATGCGAACTCCAACAAATTTTACCAACAAAGAGGTTCTGGCTATTCTCAGCAAGCTGAGAAATCTCAGTTTCCACAAGGTCCTAATTCTGCCAACCAAGCTGTGCCTGGAAAGCCATTACCAGCAGAGTCAGGCAATGTCCAGCAGCAGCAGCAGCAACAGCCAACACAACAGTCTCAGCAGCAGGGTAGCCAGAGTCAAATACAAAATACTACTAATGGTCAACCCAATCAGACAAACATAGCAGCAACACCCTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGCTATCTGTTCAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAGGTTAAACTGAATGAAGCCTTTGACTCGGTGGAAAATGTGATATTGATTTTTTCAGTCAACAGAACTCGACATTTTCAGGGATGTGCTAAGATGACATCCAGAATTGGGGGCTCTGCTACTGGGGGAAACTGGAAATATGCGCATGGAACCGCACATTATGGACGTAACTTCTCAGTTAAATGGCTAAAGTTATGTGAATTGTCATTTCACAAGACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTAAAGATAAGTAGAGATTGTCAAGAACTGGAGCCTTCTATTGGTGAGCAGTTGGCATCCTTGCTATATCTTGAGCCAGATAGTGAACTTATGGCTGTCTCACTTGCAGCAGAATCTAAGAGAGAGGAAGAGAAAGCTAAGGGAGTGAATCCAGATAATGGAGGAGGTAATCCAGATATTGTTCCATTTGAGGACAATGAAGAGGAGGAAGAGGAGGAAAGTGATGAAGAGGAGGAGAGCTTTGGCCCAGGTGTTGGGCCAGCTGCTCAAGGCAGAGGCAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCCTATGGGACGTGGAGCCCGGCCTATTCCAGGAATGCAGGGTTTTCCGCCAGTAATGATGGGAGATGGATTATCCTATGGACCAGTTACACCTGATGGATTTGGTATGCCAGATCTATTTGGTATGGGCCCTCGTGGTTTCGGTCCCTATGGTCCTAGGTTCTCTAATGATTTTGTAGGGCCCCCGGCGGCAATGATGTTCCGTGGGCGACCTTCACAACCTGGGATGTTTCCAGGTGGTGGATTTGGGATGATGATGAATCCAGCACGTGCTCCCTTTATGGGCGGAATGGGGGCTGCAGGTGGAAATCCACCACGGGCCGGTAGACCAGGTGGTATGCCTCCATTGTTCATGCCACAACCGCAACATCACAACCCTAATCGTGTTGCTAGGAGAGATCAAAGAACCAATGATCGGAATGATAGGTTTGGTTCTGGGATTGATCAGGGCAAGGGTCCGGATACGATGGGTCAATCAGGTGGACTTGATGATGATATGCAATATCAGCAAGGATTCAACACAGGCCAGGAGGATCAGTATGCTGTTGGAAACAACCTTAGAAATGAAGATAGTGAAAGTGAGGATGAGGCACCTCGAAGATCTAGACATGGTGAGGGTAAAAAGCGAAAAGGCGAGGTCTAG 2061 0.4837 MEDAEGVLSFDFEGGLDTAPANPAAPSGPLAPSDSPAVATAAANGVTPSAADPAASNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEVLQKIQHLYSYNYANSNKFYQQRGSGYSQQAEKSQFPQGPNSANQAVPGKPLPAESGNVQQQQQQQPTQQSQQQGSQSQIQNTTNGQPNQTNIAATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEVKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDNGGGNPDIVPFEDNEEEEEEESDEEEESFGPGVGPAAQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFVGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAPFMGGMGAAGGNPPRAGRPGGMPPLFMPQPQHHNPNRVARRDQRTNDRNDRFGSGIDQGKGPDTMGQSGGLDDDMQYQQGFNTGQEDQYAVGNNLRNEDSESEDEAPRRSRHGEGKKRKGEV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2158 686 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Lele16g2158 686 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Lele16g2158 686 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Lele16g2158 686 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Lele16g2158 686 ProSiteProfiles YTH domain profile. 256 391 IPR007275 GO:0003723
Lele16g2158 686 MobiDBLite consensus disorder prediction 599 618 - -
Lele16g2158 686 Gene3D - 58 121 - -
Lele16g2158 686 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 28 678 IPR045168 -
Lele16g2158 686 Gene3D ph1033 like domains 234 394 - -
Lele16g2158 686 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Lele16g2158 686 MobiDBLite consensus disorder prediction 431 449 - -
Lele16g2158 686 MobiDBLite consensus disorder prediction 176 198 - -
Lele16g2158 686 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Lele16g2158 686 MobiDBLite consensus disorder prediction 635 660 - -
Lele16g2158 686 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Lele16g2158 686 MobiDBLite consensus disorder prediction 12 37 - -
Lele16g2158 686 MobiDBLite consensus disorder prediction 405 468 - -
Lele16g2158 686 MobiDBLite consensus disorder prediction 570 686 - -
Lele16g2158 686 Pfam YT521-B-like domain 256 390 IPR007275 GO:0003723
Lele16g2158 686 MobiDBLite consensus disorder prediction 176 248 - -
Lele16g2158 686 MobiDBLite consensus disorder prediction 661 686 - -
Lele16g2158 686 MobiDBLite consensus disorder prediction 208 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2158 Lele-ChrLele16 16823338 16841337 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele16g2158 YTH 2.8e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g2158 16 16823338 16841337 Lele16g2158 16 16823338 16841337 ECH
Lele13g0280 13 13729525 13744582 Lele16g2158 16 16823338 16841337 hybridization
Lele14g0248 14 13506797 13517353 Lele16g2158 16 16823338 16841337 hybridization