Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2120 ATGCGGAGTCAGCTTGTGTGTAATGGGTGCAGGAGCGTTTTGCTTTACCCTAGGGGGGCCGCTAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGAAATTTCTCATCTTTGTTGTGGAGGATGTCGGACATTGCTGATGTACACACGTGGAGCTACAAGTGTTAGATGCTCCTGCTGTCATACTGTGAACCTTGCACCAGCGTCTAGCCACTTTGCCCATATACACTGTGGGAACTGCCGGACAACTCTAATGTATCCATATGGAGCTCCATCAGTCAAATGTGCAGTTTGTCAGTATATAACAGATACCAATAGGACCAACGGAAGGGTTCCCAATACTGTCCACAGGCCAAATGGGACAACCAACTCTGGAACAGTACCTTCTACTTCAACATCAATGCCCAATTCTCAAGGCCAAACTGTTGTGGTCGAAAATCCTATGTCCGTTGATGCAAGTGGGAAATTGGTGACCAATGTTGTCGTTGGCGTAACAACAGAGAAGAAGTGA 531 0.4689 MRSQLVCNGCRSVLLYPRGAANVCCALCNTITSVPPPGMEISHLCCGGCRTLLMYTRGATSVRCSCCHTVNLAPASSHFAHIHCGNCRTTLMYPYGAPSVKCAVCQYITDTNRTNGRVPNTVHRPNGTTNSGTVPSTSTSMPNSQGQTVVVENPMSVDASGKLVTNVVVGVTTEKK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2120 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lele16g2120 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lele16g2120 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Lele16g2120 176 PANTHER PROTEIN LSD1 3 175 IPR040319 -
Lele16g2120 176 MobiDBLite consensus disorder prediction 116 145 - -
Lele16g2120 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Lele16g2120 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Lele16g2120 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2120 Lele-ChrLele16 15783616 15789391 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele16g2120 zf-LSD1 8.4e-11 No_clan