Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2093 ATGTCCCTCTCCATCAACATTGGCTTTGGCTACTCCATTGCCATCGCCCTCGCTTTCCTCGTTCTTGCCTCTGCGCTCATTCTCTCTTTCTACCTCTGTTGCCGTAACCGTAACCGCATCCCCATTTCGAATTCGAACCCGATTCCGAATATGAACGCGACATCTTCTGGGTCGAATGTGGGATCCGAGGGTATTGTTCTGCCTCGGGTGATTTTTGTGGCGGAGGAGGAGGAGGATGATAACGAGAGCGCCGTCTTGGGGCTCGACGAGAACGTTATAAACTCGTACCCGAGGTTGCAGTACAGTAGGGGTGCTATGGGGGTTGGAAGCAGTACGATGTGTTCGATCTGTTTGTGTGAGTATAGGGATTCGGAGATGCTAAGGATGATGCCGGAGTGTCGCCATTATTTCCATCTCTTGTGCCTTGACTCTTGGCTTAAGCTAAATGGGTCATGCCCTGTTTGCCGGAACTCGCCGCTCATGACGCCGATTTCAACGCCTCTGCAAGAAGTGGTCCCGCTCTCTCAGTACCCGGCTGATCGGAGGCGACGGAGCCTTTCACATACATATAACCTCAATTGCCTAGAAATGAATGTTTTACAAGGCATCATTCTCTATAATCCTTATGATGGATTGCTACCTGCATTAAGGTTGATGTTGATTTTGGCGTTGGTTATCCTTTTGTTTTCTGCCTGCGTTGACTGGACCCATTTTTATTCTAGAGTTTCAGTTCTCATGCTGTGGCTCTATGAACATCTTTACCTTGAGCTGCAAATTCCAGGGTATATGAAATCATTCAACATCCTCAGTTCAGAAAATACAGGAATGCCAAAACTGAATGGAGCCAAAAGAAATTCGAAACACTCTGATTATGACGGTGCAAAATGTAAATCAGAGAATTCAACAAGAGTTGCAGAGTCCGATACGGTTTCTGTGATGGAAATAAGTGCCTTTCTTGCTGATATTTTAGGACTCCTGGAATCCATGGAGGCATCTATTTCAGATGAAGAGACTACTGGTCAGCATAAAATCGGTACCACGACTTCTCATCCACTTTTGAAAGCGAAGAAACGGTCTGATGAGCTGGCTGATTACTTCCTCCGGGAGGAGATTCGCAAGTACATGAAGATCAAGCCTAATAGGTTGAGAAAACAGAATTTCATGGGGACTAATGGAACCTTTACAAGTATTGGCCATGCTTGCTTCGCCATGAAGGAAGAGCTGGAGGAATACATGGATTATGACATTGGTGAAATCTGCAATGATGACTGGAAACTGGCTCAGAAGCTCATGGTTCATGGTTGTGATCCTCTCCCAAGGAGAAGATGCCTTGCGAGAGTGCCTCGGCTATACATGCAGCCATTCCCGATCAATGAGTCCCTCTGGAAACTCCCGGATGACAGAAAAGTCCGGTGGAGTCAATACCGGTGCAAGAACTTCTCTTGCCTCGCCAGGAACACCGCTCGCAAGGGATTCTTCAAGTGTTCAGATTGCTTCAACCTCACTCATCATGAAATGCCCAGATGGGTAACATTGGATCCAAGTTCTGAAAATCAGACTTCTGATTTCCTCATATCTGATGTTCTTCAAATCAAGCCAGGAGAAATCAGAATAGGATTGGATTTCAGTGTTGGAACTGGAACTTTTGCAACTAGAATGAAAGAACACAATGTGACTATAGTTTCTGCAACTATAAACCTAGGAGCGCCCTTCAATGAAATGATAGCTCTCAGAGGACTTGTTCCTCTATACTTAACCATAAATCAGCGGCTTCCATTCTTCGATAACACCCTCGACTTGATACACACGACGAGGTTTCTGGACGGATGGATCAATTTCGTGCTGCTGGATTCCGTGCTTGTTGATTGGGATAGAGTTCCGAGGCCAGGTGGGTTGTTGTGGATTGACAGCTTCTTCTGTTTGAAAGAGGATTTGGATGATTACTTGGAAGCTTTCAAGATGCTGAGGTACAAAAAACGCAAGTGGGTTGTTGTTCCGAAGATTGATAAAAGTGATGAAGAAGTGTTCTTTTCTGCTGTCTTAGAGAAGCCTCCTAGACCATTCTGA 2067 0.4557 MSLSINIGFGYSIAIALAFLVLASALILSFYLCCRNRNRIPISNSNPIPNMNATSSGSNVGSEGIVLPRVIFVAEEEEDDNESAVLGLDENVINSYPRLQYSRGAMGVGSSTMCSICLCEYRDSEMLRMMPECRHYFHLLCLDSWLKLNGSCPVCRNSPLMTPISTPLQEVVPLSQYPADRRRRSLSHTYNLNCLEMNVLQGIILYNPYDGLLPALRLMLILALVILLFSACVDWTHFYSRVSVLMLWLYEHLYLELQIPGYMKSFNILSSENTGMPKLNGAKRNSKHSDYDGAKCKSENSTRVAESDTVSVMEISAFLADILGLLESMEASISDEETTGQHKIGTTTSHPLLKAKKRSDELADYFLREEIRKYMKIKPNRLRKQNFMGTNGTFTSIGHACFAMKEELEEYMDYDIGEICNDDWKLAQKLMVHGCDPLPRRRCLARVPRLYMQPFPINESLWKLPDDRKVRWSQYRCKNFSCLARNTARKGFFKCSDCFNLTHHEMPRWVTLDPSSENQTSDFLISDVLQIKPGEIRIGLDFSVGTGTFATRMKEHNVTIVSATINLGAPFNEMIALRGLVPLYLTINQRLPFFDNTLDLIHTTRFLDGWINFVLLDSVLVDWDRVPRPGGLLWIDSFFCLKEDLDDYLEAFKMLRYKKRKWVVVPKIDKSDEEVFFSAVLEKPPRPF 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2093 688 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lele16g2093 688 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 529 650 IPR004159 GO:0008168
Lele16g2093 688 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 526 683 IPR029063 -
Lele16g2093 688 CDD RING-H2_PA-TM-RING 114 156 - -
Lele16g2093 688 SUPERFAMILY RING/U-box 113 160 - -
Lele16g2093 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 160 IPR013083 -
Lele16g2093 688 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 310 687 - -
Lele16g2093 688 SMART ring_2 114 155 IPR001841 -
Lele16g2093 688 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2093 Lele-ChrLele16 13208945 13212935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2093 8 182 C3H Transcription Factor Family AT2G35910 38.286 3.50e-30 116