Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2087 ATGCACCAATCTCTGCCTGCTCGATTTTGTGAGTCATCTGCTATGGCAAAGAAGCGCGATCTATCATACATTGCCTCCTCCACCTTTCTTCAGCAACAGTTTCAAAACCCTAGCGACAACTGGAATCCAAAGGGATGGGACTGGGATGCTGTCAGATTCATTGCCAAACCGTTGGACACTAACAACCTTGAACCGGGAGCTCCCACACCCTCTATAAAAGATCAGCGTACCAATTTCTACAACCTCACTGCTGTTGACGATGATGAGCATAAAGAAAGCCTTCGTTTGAAACTTGGTGGTCGTCCGGCCTTCAATGCATTGCAGGAGCCCATGTCCCGCCTGAGCAAAAGGTTACGTTCTCGCTCACCTGGTGGACCCTCTTACCCTATGTGTCAGGTAGACGACTGTGAGGAAGATCTCTCCAATGCCAAAGACTATCACCGCCGACACAAAGTTTGTGAGCATCACAGCAAATCTTCTAAAGCCTTTGTTGCTAACCAATCACAACGGTTCTGCCAACAATGTAGCAGATTTCACCTGCTATCAGAGTTCGATGAGGGGAAGAGAAGTTGTAGGCGTAGACTTGCTGGTCATAATCGTCGCAGAAGAAAAACTCAACCAGAAGATGTTACCTCCCTGCTCCTCGTTGAAAACCAGGATAATGCAACATCTAGGAATTTGGATATTGTCGACTTGTTGACTACAATTGCTGGTGCACAAGGGAAATTTGAGGAAAGAAGTAAAACTTGTTCACAACTTCCTCAGAAAGAGGCCCTTGTTCACATTCTTGATAGGATAAATTCATTACCTTTGCAAGCTGACCTTGCTGCAAATTTGGCCAATGTTGGAAATTTATGTATGAGCAGTCTTGGGCAAACTTCAAATCATCATGATAAATTGAACCAGAACAAATCTTCTCCATCAACTATGGACTTGATTAATGTTCTTTCAGAAACTCTATCAGCATCTACTCCTGATGCCATTGCTTTACACTCTAAAAAATGCAAATCTAGTAGTGACAGTGAGAAATCTAGGACAAGTGTTGATGATCAAACAACTGAGCGTAGTCTATGGACGGGGCAACCATTAGAATTTACTTCAATTGGAGCAGAAAAAAGTAGTGGCAATTACCAGTTGCCTGTTGAGGATTCAGTCAGCCAGGTTCAAGAGACTCAAAACAAATTACCATTGCAGCTTTTTAGCTCCTCTTTAGATGATGAAAGCCAGCCAAAAATGCCTTCTCGAAAGTATCTCTCATCAGACAGTAGTAATCCTATTGAGGAGATGTCACCATCTTCTTCACCCTCTTGGGTACAGAAGCAGTTTGCTTCGCAGAGTATAACTGAAGGTATCAAGTCAGACAAAATTTTAATTGGAAGAGGGACCAATGCACATAAAGAAGCCAGCCAAAGCAATGACTGTGATATTTCTCTTGATCTTTTTGGAGGATCAAATAACAGAGTTCAACCTAGCTCTGTGCAAAGTGTTCCAGTTCAAACTGGGTACACATCTTTGGGATCTGATCACTCGCCTCCTAGTTTGAATTCAGATGCTCAGGGCCGTACTGGTCGAATAATGTTCAAACTATTTGATAAGGATCCTAGTCATTTCCCTGGAACACTGCGAAATCAGATTTACAATTGGCTTTCTAATAGCCCTTCAGAGATGGAGAGCTACATAAGACCTGGCTGTGTGATCCTTTCAGTCTATGTTTCAATGTCTTCTTCTGCCTGGGAGCAACTAGAAGAAAATTTTGTTCAACATGTTCGTTATTTAATTCAAACTTCTGATTCTAAATTTTGGAGAAATGGGAGATTTCTAGTTCATTCTGGCAGTCAGTTAGCATTATATAAAGATGGAAAGATACACTTACGAAAAAGATGGAGAACATGGAGGTCTCCGGAGTTGATATCTGTCTCCCCTTTGGCAATTGTTGGGGGCCAAGAAACATCAATTTCATTGAAGGGTAGAAATCTGTCAACTTCTGGAACCAAGATTCATTGCACAAGTACAAGTTATTACACATCAAAGGAAGTTGTAGGGTCTGTTTATTCGGGTATGACATATGATGAAGTAAAATTGGGTGGATTTAAAGTACACAATGCATCTCCTGGTGTTCTTGGTCGCTGTTTCATTGAGGTTGAGAATGGTTACAAGGGTAACAGTTTTCCAGTTATAATAGCCAATGCAACTATTTGTAAGGAATTGCGGTTACTTGAGTCTGAGTTTGTTAAGGAGGCAAAATTAAGTGATGCAGTTGCTGAAGAGAACAATTGTGAATTTGCAAGGACTGGGTCAAGGGAGGAGGTTATGCAGTTTTTGAATGAGCTTGGCTGGCTATTCCAAAGGAAAAGATTCTCATATGCACATGAGGTTCCAGTTTTTTCACTTGACAGGTTCAAATTTTTACTCACATTTTCTGTGGAAAGAAACTGTTTAGTGGTAGTTAAAACCCTTATGGATATGCTGGTTGAGGAACACTTGGAAGGGGAATGGCTGTCCAAGGGATCGGTGGAGATGGTGAATGCAATTGAACTATTAAACCGGGCTGTGAAAAGACGGTATATAAAAATGGTTGACTTGCTTATCCACTATTTTATACCTAGCAAAAATGACACATCCAGGAAATATGTATTTCTGCCGAATCTTGAGGGACCTGCTGGTATTACACCCTTACATTTGGCTGCTTGCACATCAGGTTCTGAGGGTATAATTGACTCTTTGACAAATGATCCGCAAGAGATTGGATTGAAGTGCTGGGAGTCTCTAGCGGATGTAAATGGGCAAACTCCTTATGCCTATGCCGTGATGAGAAATAATCACTCTTATAACACGCTGATTGCTCGTAAAATTGCTGATAGAGAAAAATGCCAAGTTTCGGTAACAATTGAAACCGAGATAGAGCAACCGTTGGCCAGTATTCAGCATAAAACAAGCCCAAGCAACGAAGTGGGGCAAGGTCAGAGATCTTGTTCTAAGTGTGCAGTTGCAGCAATGTACTACAACAGGAGGGTCTTGCGTTCACAGGGACTGCTTCACCGCCCTTACATTCATTCGGTTCTCGCTATTGCTGCCGTTTGCGTATGTGTTTGCCTATTCTTCCGTGGATCCCCTGACATAGGTTCAGTTGCACCCTTCAAGTGGGAAAATTTGGATTATGGCACATTGTAA 3171 0.4204 MHQSLPARFCESSAMAKKRDLSYIASSTFLQQQFQNPSDNWNPKGWDWDAVRFIAKPLDTNNLEPGAPTPSIKDQRTNFYNLTAVDDDEHKESLRLKLGGRPAFNALQEPMSRLSKRLRSRSPGGPSYPMCQVDDCEEDLSNAKDYHRRHKVCEHHSKSSKAFVANQSQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSLLLVENQDNATSRNLDIVDLLTTIAGAQGKFEERSKTCSQLPQKEALVHILDRINSLPLQADLAANLANVGNLCMSSLGQTSNHHDKLNQNKSSPSTMDLINVLSETLSASTPDAIALHSKKCKSSSDSEKSRTSVDDQTTERSLWTGQPLEFTSIGAEKSSGNYQLPVEDSVSQVQETQNKLPLQLFSSSLDDESQPKMPSRKYLSSDSSNPIEEMSPSSSPSWVQKQFASQSITEGIKSDKILIGRGTNAHKEASQSNDCDISLDLFGGSNNRVQPSSVQSVPVQTGYTSLGSDHSPPSLNSDAQGRTGRIMFKLFDKDPSHFPGTLRNQIYNWLSNSPSEMESYIRPGCVILSVYVSMSSSAWEQLEENFVQHVRYLIQTSDSKFWRNGRFLVHSGSQLALYKDGKIHLRKRWRTWRSPELISVSPLAIVGGQETSISLKGRNLSTSGTKIHCTSTSYYTSKEVVGSVYSGMTYDEVKLGGFKVHNASPGVLGRCFIEVENGYKGNSFPVIIANATICKELRLLESEFVKEAKLSDAVAEENNCEFARTGSREEVMQFLNELGWLFQRKRFSYAHEVPVFSLDRFKFLLTFSVERNCLVVVKTLMDMLVEEHLEGEWLSKGSVEMVNAIELLNRAVKRRYIKMVDLLIHYFIPSKNDTSRKYVFLPNLEGPAGITPLHLAACTSGSEGIIDSLTNDPQEIGLKCWESLADVNGQTPYAYAVMRNNHSYNTLIARKIADREKCQVSVTIETEIEQPLASIQHKTSPSNEVGQGQRSCSKCAVAAMYYNRRVLRSQGLLHRPYIHSVLAIAAVCVCVCLFFRGSPDIGSVAPFKWENLDYGTL 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2087 1056 Gene3D - 122 192 IPR036893 GO:0003677|GO:0005634
Lele16g2087 1056 SUPERFAMILY Ankyrin repeat 847 946 IPR036770 -
Lele16g2087 1056 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 836 IPR044817 GO:0003677
Lele16g2087 1056 MobiDBLite consensus disorder prediction 488 518 - -
Lele16g2087 1056 MobiDBLite consensus disorder prediction 331 364 - -
Lele16g2087 1056 MobiDBLite consensus disorder prediction 333 350 - -
Lele16g2087 1056 Gene3D - 812 965 IPR036770 -
Lele16g2087 1056 ProSiteProfiles Zinc finger SBP-type profile. 128 205 IPR004333 GO:0003677
Lele16g2087 1056 Pfam SBP domain 131 204 IPR004333 GO:0003677
Lele16g2087 1056 SUPERFAMILY SBT domain 129 209 IPR036893 GO:0003677|GO:0005634
Lele16g2087 1056 MobiDBLite consensus disorder prediction 401 437 - -
Lele16g2087 1056 FunFam Squamosa promoter-binding-like protein 14 123 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2087 Lele-ChrLele16 13139654 13144879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2087 14 1056 SBP-box Gene Family AT1G20980 50.995 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele16g2087 SBP 1.5e-28 No_clan