Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2078 ATGGGCTGTATATGCTCGAAAGCGAATTCTTCAAATGATTACGTTGCTGAGGACCATGCCAGAGACAAGGATACGAAAGCAAATAGAATCTCAAAACATTTGATTTCGGGAGAGAAGGTCGCAATAGAGGCTGATGGTAGTGGTAATGATGCGACTACACGGTTGATATCTAATCCGTTTCGGAATGGAACTTCAGGGTCCACTTCCGCGTCATCAGACGAGGGGGAGAAGAACGGAGAAACAGAAACTACTGTAAAGCCTGCAAAACAACTGGTTCATATGGCCTCAAACATAGGAATTGGAAATGGAGGACAAGTACAACCTAAGATGGCTAGGATAGTTACTGTACCTAAAGGGGAAAGAGGAGCTCAAGTTCTTGCTGGCTGGCCTTCTTGGCTTACTGCAGTTGCAGGGGAAGCCATTAATGGTTGGATCCCTCGCAGAGCAGACTCATATGAGAAGTTGGAGAAGATTGGGCAAGGAACTTACAGCAGTGTTTACAGAGCTCGTGATCTAGAAACAAACAAAATTGTTGCATTGAAGAAGGTTCGATTTGCTAATATGGATCCAGAGAGTGTTCGTTTTATGGCGAGGGAAATTATTGTACTGCGAAGGCTTGATCACCCAAATGTCATGAAACTTGAAGGAATCATTACTTCACGGCTCTCGGGTAGCTTGTATCTCGTTTTTGAATATATGGAACATGATCTTGCAGGGCTTTCAGCAACACCTGGCATCAAGTTCACTGAAGGGCAGATCAAATGTTATATGCAACAGTTGCTTCGTGGTATTGAGCACTGCCACAGTCATGGTGTTCTACATCGAGACATCAAGGGTTCAAATCTTCTGATTGACAAGAATGGCAATCTAAAGATTGGTGATTTTGGGTTAGCAACTTTCTTTGAGCCTTCTAAGGGTCAGGTTCTGACAAGTCGTGTGGTAACCTTGTGGTACCGTCCACCTGAACTCCTACTGGGAGCCACAAATTATGGGGTTGCAGTGGACTTGTGGAGTGCTGGTTGCATTCTTGCAGAGTTGTTTGCCGGAAAGCCTATAATGCCTGGACGAACAGAGGTGGAACAACTTCACAAAATCTTCAAACTCTGTGGATCACCGTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAACCTCAACATCCCTACAAACGTGTTGTTGCTGAGACATTTAAGGATTTTCCTCCATCAGCATTAAGCCTTATGGAAGTCCTCCTTGCTATTGAACCAGAGGATCGAGAAACTGCTTCTTTAGCACTTCAGAGCGAGTTCTTTACCATGGAGCCCCTTCCTTGTGATCCTTCAACTTTGCCAAAATATCCACCCACTAAGGAGTTTGATGTCAAGTTCCGACAAGAAGAAGCCAGAAGACGGAGAACTGCGAATAATAAAGGAAATGCAGAGGAATCAGCTAAAATGGTTTCCAAAGAATCTAAAGCTGTTCCAGCACCTGATGCTAATGCTGAGTTACGGTCATCAATTGAGAAGAGACAAGGGCTGGCTAACCCCAAATGTATCAGCGAGAAGTTCAATCCTGATGAGGATGGTGGTTCTGGCTTCCCTATTGAACCTTCGAAGACAGGGCTCTCTCATTCTGGTCAGTCGATGCATCCAAGCGTGTATGGATCTTCACGCAATATGAATTCGAACAAGGAAGAGTCTATTGCCGGCCCTGGCCATGTCTATAAATCAGGAAATCCTGCAGTGTTGAGAAAACAGAGATCCTACATGCACAGGAATGCTGCCCAATTGTCAAGATTTTCTAATTCAGTTGCCAATGGAGGTGGTTTAAAGCTCGATATGAGTGGAGATGCTAGTGTGAGTTCACAGTGGCCTGATGATTGCTTTGGCGCACGATATGACCATCTTGTTGATGATGAATCCAACCAATTGCTCAAGTCTTTGCACAAGAAGGACATACATCCTTGCACAAAGGAGCCTCCCAAGGCTTTTCCCCCAAAAAATGGTCAAATGTACTATTCAGGGCCACTGGTCCCTGGTGGTGAAAATCTTGATGAAATGCTTAAGGAGCATGAAAGGCAAATCCAACAAGCTGTCCGCAAGGCACGCTCAAATAAGGTCAAGATCAGTAAATGTGACAATGACAATGGCCAAACTGAATCCCTACTTCACCATGAATCATTGAGTCTCATCAAGGGTTCTCGAAATATCCATGACTATGGCTTCTGTCTCAGTTCTAACCAAGCAACTGTAGTTGTTCAAAGGCCTAAAGCTAATCAAACCCTGAACTTGAAGCTCCTCATTCTGGGGCTTTTGGTTGCTCTTTTACTCATCTTTGTTCTGAGATCAGATTTCTCTTCTTCAAACCAAGACCTGACTAATCCCAGTTCTTCACATACAGCAGAAGTAGCCATGGATTCTTCAAATGGTGAGAAAGAGAAGAGTAACGAGACAAGAAATTGTTCATCACTTGTTTGCAACAAGATTCCAGCTTCTCTAGCTCAAGCTCTGATACATTACACAACCTCAACAATAACCCCACAACAAACTCTGAAAGAGATATCAGTGACAGCAAGAGTTTTGGAGAAGAGATCACCATGCAATTTCTTAGTGTTTGGCTTAGGCCATGATAGCCTCATGTGGAGTTCTCTCAACCATGGTGGCAGAACTGTCTTCCTTGAAGAAGATGAGGCATGGATTGAGAAAATTAAGCACAGGTTCCCCATGTTAGAATCCTACCATGTGACTTATGAGAGCAAGGTGAATGAAGCAGATAACCTAATGGAGATTGGAAGAGGAAGAGAGTGTAGAGAAGTTTGGGATCCAAGAGAGTCCAAATGCCAACTTGCATTGAAAGGGTTCCCAAGTGAGATTTATGAGACACAGTGGGATTTAATTATGGTGGATGCACCCACAGGGTACCATGAGGATGCACCAGGGAGAAAGACTGCTATATACACTGCTGGCCTCATGGCTAGGACTAGGGACAATGGAGAGACTCATGTGTTTGTGCATGATGTCAATAGAGAAGTGGAAGACAAGTTCTCTAAGGAATTTTTATGTGAAAATTACATGAGGAAGCAACAAGGGAGATTAAGACACTTCACTATTCCTTCTTACAATGAATTGGATAGACCATTTTGTCCTCCGTAA 3147 0.4366 MGCICSKANSSNDYVAEDHARDKDTKANRISKHLISGEKVAIEADGSGNDATTRLISNPFRNGTSGSTSASSDEGEKNGETETTVKPAKQLVHMASNIGIGNGGQVQPKMARIVTVPKGERGAQVLAGWPSWLTAVAGEAINGWIPRRADSYEKLEKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREIIVLRRLDHPNVMKLEGIITSRLSGSLYLVFEYMEHDLAGLSATPGIKFTEGQIKCYMQQLLRGIEHCHSHGVLHRDIKGSNLLIDKNGNLKIGDFGLATFFEPSKGQVLTSRVVTLWYRPPELLLGATNYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRVVAETFKDFPPSALSLMEVLLAIEPEDRETASLALQSEFFTMEPLPCDPSTLPKYPPTKEFDVKFRQEEARRRRTANNKGNAEESAKMVSKESKAVPAPDANAELRSSIEKRQGLANPKCISEKFNPDEDGGSGFPIEPSKTGLSHSGQSMHPSVYGSSRNMNSNKEESIAGPGHVYKSGNPAVLRKQRSYMHRNAAQLSRFSNSVANGGGLKLDMSGDASVSSQWPDDCFGARYDHLVDDESNQLLKSLHKKDIHPCTKEPPKAFPPKNGQMYYSGPLVPGGENLDEMLKEHERQIQQAVRKARSNKVKISKCDNDNGQTESLLHHESLSLIKGSRNIHDYGFCLSSNQATVVVQRPKANQTLNLKLLILGLLVALLLIFVLRSDFSSSNQDLTNPSSSHTAEVAMDSSNGEKEKSNETRNCSSLVCNKIPASLAQALIHYTTSTITPQQTLKEISVTARVLEKRSPCNFLVFGLGHDSLMWSSLNHGGRTVFLEEDEAWIEKIKHRFPMLESYHVTYESKVNEADNLMEIGRGRECREVWDPRESKCQLALKGFPSEIYETQWDLIMVDAPTGYHEDAPGRKTAIYTAGLMARTRDNGETHVFVHDVNREVEDKFSKEFLCENYMRKQQGRLRHFTIPSYNELDRPFCPP 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2078 1048 MobiDBLite consensus disorder prediction 462 486 - -
Lele16g2078 1048 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 826 1046 IPR006514 GO:0045492
Lele16g2078 1048 SMART serkin_6 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g2078 1048 CDD STKc_CDK9_like 152 436 - -
Lele16g2078 1048 MobiDBLite consensus disorder prediction 536 557 - -
Lele16g2078 1048 MobiDBLite consensus disorder prediction 785 814 - -
Lele16g2078 1048 SUPERFAMILY Protein kinase-like (PK-like) 145 443 IPR011009 -
Lele16g2078 1048 MobiDBLite consensus disorder prediction 462 557 - -
Lele16g2078 1048 MobiDBLite consensus disorder prediction 50 74 - -
Lele16g2078 1048 FunFam probable serine/threonine-protein kinase At1g54610 235 476 - -
Lele16g2078 1048 Gene3D Phosphorylase Kinase; domain 1 147 239 - -
Lele16g2078 1048 MobiDBLite consensus disorder prediction 1 26 - -
Lele16g2078 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Lele16g2078 1048 PANTHER OS11G0490100 PROTEIN 761 1047 IPR006514 GO:0045492
Lele16g2078 1048 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Lele16g2078 1048 Gene3D Transferase(Phosphotransferase) domain 1 240 476 - -
Lele16g2078 1048 Pfam Protein kinase domain 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g2078 1048 MobiDBLite consensus disorder prediction 38 87 - -
Lele16g2078 1048 FunFam probable serine/threonine-protein kinase At1g54610 139 234 - -
Lele16g2078 1048 Pfam Polysaccharide biosynthesis 850 1033 IPR021148 -
Lele16g2078 1048 ProSiteProfiles Protein kinase domain profile. 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g2078 1048 Coils Coil 679 706 - -
Lele16g2078 1048 MobiDBLite consensus disorder prediction 785 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2078 Lele-ChrLele16 13064072 13072010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2078 144 577 Core Cell Cycle Gene Families AT5G10270 43.430 7.79e-113 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele16g2078 Pkinase 1.3e-69 CL0016