Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2074 ATGGCCAGAGTTTCCACATCTGTATCTCCCAAACATGGGGAATGGGTGAAGGGGAAATTGGTAGGATCAGGATCTTTTGGGAATGTTAATTTAGCCATGAGCAAATCCACAGGAGGACTCTTTGTTGTTAAATCAGCACATACAAGGGCTGAATTTGCGGCTTTAGAGAATGAGGTTGAAATTCTCAAGAATCTAGAACAATCTCCTTATATAGTCCAATACTTAGGGTCAGAAAGAGATGGAAATGATCTCAGGGTTCTAATGGAGTACATGGCTGGGGGTAGTTTGGCTGATATTGCAGAGAAATTCGGCGGATCATTACAAGAAGATGTAGTTCGTTTATACACAAAAGAAATCCTTGAAGGCCTCAAGTATCTTCACGGTAATGGGATTGTGCACTGTGACCTTAAGTGCAAAAACGTGCTTCTGGGGTCTTTTGGGGACATCAAATTGGCAGATTTTGGATGTGCAAGGAGGGTCGAGGACTTGAAAAATAACGATTTGATGAAGAATAATAATAACAACAAGAAGTCTTTGGAATATGTTAGTGGGACCCCTCTCTGGATGGCTCCTGAAGTTTTGAGGAATGAAAAGCTTGATTTTGCTGCAGATATATGGTCTTTGGGATGCACTGTTATTGAAATGGCTACTGGTAGGCCTCCTTGGGGTGCTTCTAATAAGTATGATTCAAACCCAATGGCTGTCATTTTGAAGATTGCATGTGGTGATGAGATACCTAAACTCCCAACCCATTTCTCAAAGGAGGGTATGGATTTCTTGAGGAGGTGTTTAGAGAGAGACTCAAAAAAAAGGGGGACATGTGAGGAATTACTTAGGCACCCATTTGTGTCAAGGGATTATTACTCATCTGTAACTGTAACAACTACAACACCATCTTCACCCAAAGAAGACACTGCTTCCTCACCAGTCAGTGTGTTGTTGGGGATCTCAAGTTTTGATTATGCTTATGATTTGGCGGATGAATCAGAAAGTCCAGAGGAAAATGATTTCTCAGTCATAAACCCATTCACATGTTGCAAAGATGGAAGAAAAGGAATTGCAATGCTAAGAAATGGGGATGAGTGTGTATTTTGTTCATCACAGAATTGGATTACTGTTAGATCATGA 1128 0.4087 MARVSTSVSPKHGEWVKGKLVGSGSFGNVNLAMSKSTGGLFVVKSAHTRAEFAALENEVEILKNLEQSPYIVQYLGSERDGNDLRVLMEYMAGGSLADIAEKFGGSLQEDVVRLYTKEILEGLKYLHGNGIVHCDLKCKNVLLGSFGDIKLADFGCARRVEDLKNNDLMKNNNNNKKSLEYVSGTPLWMAPEVLRNEKLDFAADIWSLGCTVIEMATGRPPWGASNKYDSNPMAVILKIACGDEIPKLPTHFSKEGMDFLRRCLERDSKKRGTCEELLRHPFVSRDYYSSVTVTTTTPSSPKEDTASSPVSVLLGISSFDYAYDLADESESPEENDFSVINPFTCCKDGRKGIAMLRNGDECVFCSSQNWITVRS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2074 375 Gene3D Transferase(Phosphotransferase) domain 1 9 337 - -
Lele16g2074 375 CDD STKc_MAPKKK 14 283 - -
Lele16g2074 375 Pfam Protein kinase domain 17 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g2074 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lele16g2074 375 SMART serkin_6 15 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g2074 375 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lele16g2074 375 ProSiteProfiles Protein kinase domain profile. 15 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g2074 375 SUPERFAMILY Protein kinase-like (PK-like) 13 316 IPR011009 -
Lele16g2074 375 Coils Coil 45 65 - -
Lele16g2074 375 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 13 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2074 Lele-ChrLele16 13031735 13032862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2074 5 286 MAP Kinase Kinase Kinase AT5G55090 46.341 4.01e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele16g2074 Pkinase 1.7e-63 CL0016