Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2069 ATGGCTTCTCATTCTCAACCTTCCGGTTCTATCCATTTCTTCAAAATCATCTTGAAATCCAATCTTGAAGCCATTAGGATTCCAAACAAATTTACAGCAAGATATGGAAGTGGTTTGTCAAACCCAGTGTTTCTGAAGCCTCCTGATGGGAAAGAGTGGAAAGTGTATCAGACAAAACTTGATAATGATGAGGTTTGGTTTCAAAAGGGGTGGAAGGAATTTGCTCGCTTTTACTCTCTAGATGAAGGGCATTTGATTTTGTTCAAGTATGAAGCAACTTCTCAGTTTGATGTACGCGTATTCGATAAGAGTGCACTTGAAATAGACTATACTTCTTCATCAAAGAATAATAATCCCAGTGATGATACAGTTGAGGTATTGGATGAGATGCCTCCGAACCGAAATGCTACCCACAAAACACCTTTTTCATCTTCTAGGCCTCATAAGAAAATGAGAAGTCAGAAGAATTTTCTTTTGGGTTCGGAAACTAATTATGTTCAATGTCAAGGAATAGAGTTTCAGAAATCAACCAATGCAGAATTGAAGTTTCCTAAGAAGGAACAAGAAGAAGACATGGGAGCAAGAATTTTTGCTAAGAGTACATGCTTGAATACTGAGCATAGAAGGAAAAAAGCATTAACTACTGTGGAAAAGATCAGAGCTATAAACAGTGCGAGTTCTTTCGAATCCAAAAATCCCTTTTTCATGGTAATCATGCGGCCTTCATATGTCAGTCATAAATGTTACTTGGGGATACCAACAAAATTCGCTAGAAGACATTTGGAGAAAGAGTGTGGTGTTGTGAAACTTGAGGCCTTGGATGGGAGAACTTGGCCTACTAGGTATAAGATTCCTAGAATCAAAGATGGATGGGATAAGTTTGTGATGGAAAATGGTTTAAAAGTGGGCCAAGTTTGTGTTTTTGAAATGATTGGTCGCGTGTTCAAAGTACATATTTTTAGAGAAGAAGAAGAAGTTCTCATGAATTCTATTTACTGCACAGTTAAAATCAGAAAGAGGACTGAAAAGGAGCAGATCAGCAGTATGCAACAGACTCCTATTGAAAAGGCTAGCTCTTTCAAGTCTGAAAATCCTCATTTTGTGGTTAAGATGACACATGCTTACGTTGATGGCAGATCAAACTTGCATGTGCCATCACAATTTGCAAGAAAACATCTTCACACCTGTACTGAGAGTGTCAAACTTGTTGTACAAGATGTAACTTGGCCTGTTGAGTATGTATTTAGATTAACTGGTCAAGGAATTGAAAAGCATGAACTTTCCATTTGTGGATGGAGGCAATTTCGCAAGGATAATGACTTGAAATTAGGTGATACTTGTGTCTTTGAGCTCATCCCCAACGTCAAACTTACACTTCAAGTAACAATTTTACGAGCCACTAATCATTCGGCAAACTCAGTTGGGAGCAGGAAGCCAAACGCAGAAGTTCATTAA 1455 0.3821 MASHSQPSGSIHFFKIILKSNLEAIRIPNKFTARYGSGLSNPVFLKPPDGKEWKVYQTKLDNDEVWFQKGWKEFARFYSLDEGHLILFKYEATSQFDVRVFDKSALEIDYTSSSKNNNPSDDTVEVLDEMPPNRNATHKTPFSSSRPHKKMRSQKNFLLGSETNYVQCQGIEFQKSTNAELKFPKKEQEEDMGARIFAKSTCLNTEHRRKKALTTVEKIRAINSASSFESKNPFFMVIMRPSYVSHKCYLGIPTKFARRHLEKECGVVKLEALDGRTWPTRYKIPRIKDGWDKFVMENGLKVGQVCVFEMIGRVFKVHIFREEEEVLMNSIYCTVKIRKRTEKEQISSMQQTPIEKASSFKSENPHFVVKMTHAYVDGRSNLHVPSQFARKHLHTCTESVKLVVQDVTWPVEYVFRLTGQGIEKHELSICGWRQFRKDNDLKLGDTCVFELIPNVKLTLQVTILRATNHSANSVGSRKPNAEVH 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2069 484 MobiDBLite consensus disorder prediction 129 148 - -
Lele16g2069 484 ProSiteProfiles B3 DNA-binding domain profile. 367 467 IPR003340 GO:0003677
Lele16g2069 484 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 338 467 IPR044837 -
Lele16g2069 484 Gene3D - 212 325 IPR015300 -
Lele16g2069 484 Gene3D - 346 469 IPR015300 -
Lele16g2069 484 CDD B3_DNA 365 465 IPR003340 GO:0003677
Lele16g2069 484 CDD B3_DNA 12 102 IPR003340 GO:0003677
Lele16g2069 484 Pfam B3 DNA binding domain 20 103 IPR003340 GO:0003677
Lele16g2069 484 Pfam B3 DNA binding domain 367 466 IPR003340 GO:0003677
Lele16g2069 484 Pfam B3 DNA binding domain 235 322 IPR003340 GO:0003677
Lele16g2069 484 ProSiteProfiles B3 DNA-binding domain profile. 235 323 IPR003340 GO:0003677
Lele16g2069 484 SUPERFAMILY DNA-binding pseudobarrel domain 362 466 IPR015300 -
Lele16g2069 484 CDD B3_DNA 233 321 IPR003340 GO:0003677
Lele16g2069 484 Gene3D - 6 105 IPR015300 -
Lele16g2069 484 ProSiteProfiles B3 DNA-binding domain profile. 10 104 IPR003340 GO:0003677
Lele16g2069 484 SUPERFAMILY DNA-binding pseudobarrel domain 228 321 IPR015300 -
Lele16g2069 484 SUPERFAMILY DNA-binding pseudobarrel domain 9 111 IPR015300 -
Lele16g2069 484 SMART B3_2 367 467 IPR003340 GO:0003677
Lele16g2069 484 SMART B3_2 13 104 IPR003340 GO:0003677
Lele16g2069 484 SMART B3_2 235 323 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2069 Lele-ChrLele16 12980220 12985112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2069 321 468 B3 DNA Binding Superfamily AT3G18990 27.027 1.16e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele16g2069 B3 1.2e-14 CL0405