Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2048 ATGTCGTTCCGGAGTATAGTTTGTGATGTGAAAGATAGCTTAGGTAGCTTATCTAGACGGAGTTTTGATGTGTGGCTGACGGGCCATCACAGAGGAACATCTCGTGGTGCTATACATGATCAACCAGAAGTAATTGAAAATAGTTGCTGGGTTAGCTTGCCCCCAGAATTGTTGTATGATATCATTAGAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTATGCCGGTCTTGGAGGACTATGTGCAAAGAAATTGTTAAGAGTCCAGAGTCTAGTGGCAAGCTTACTTTCCCCTTGTCCTTGAAGCAGCCAGGATCACGAGACGGAACCATTCAATGTTTCATCAGAAGAGATAAATCAAATTCATCATATTGCCTTTTCCTTTGTCTCAGCCCTACTTTATTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTATACAGAGTATATTATTTCCATGGATGCTGGCAATATCTCTAGATCGAGTAGCTTTTACATTGGAAAGCTGAGATCGAACTTGATGGGTACGAAATTTATAATATACGATACACAGCCTCCATGCAATAATGCCCATATACCGCCTCCAAGGAGGACAAGCCGAAGGTTTTATTCGAAAAAGGTTTCGCGAAAGGTCCCATCTGGGAGCTACAACATAGCTCAAGTAACATATGAATTAAATGTGCTCAGGACATGA 744 0.4167 MSFRSIVCDVKDSLGSLSRRSFDVWLTGHHRGTSRGAIHDQPEVIENSCWVSLPPELLYDIIRRLEESESTWPARKHVVACAAVCRSWRTMCKEIVKSPESSGKLTFPLSLKQPGSRDGTIQCFIRRDKSNSSYCLFLCLSPTLLVENGKFLLSAKRTRRTTYTEYIISMDAGNISRSSSFYIGKLRSNLMGTKFIIYDTQPPCNNAHIPPPRRTSRRFYSKKVSRKVPSGSYNIAQVTYELNVLRT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2048 247 SUPERFAMILY Tubby C-terminal domain-like 99 246 IPR025659 -
Lele16g2048 247 Gene3D - 43 97 - -
Lele16g2048 247 Pfam Tub family 111 247 IPR000007 -
Lele16g2048 247 Gene3D Tubby Protein; Chain A 110 247 IPR025659 -
Lele16g2048 247 FunFam Tubby-like F-box protein 45 98 - -
Lele16g2048 247 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Lele16g2048 247 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Lele16g2048 247 PRINTS Tubby superfamily signature 232 247 IPR000007 -
Lele16g2048 247 SUPERFAMILY F-box domain 44 93 IPR036047 GO:0005515
Lele16g2048 247 Pfam F-box domain 50 97 IPR001810 GO:0005515
Lele16g2048 247 PANTHER TUBBY-RELATED 40 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2048 Lele-ChrLele16 12724751 12726817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2048 1 247 TUB Transcription Factor Family AT1G76900 69.922 2.95e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele16g2048 Tub 2.7e-45 CL0395