Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2047 ATGCATTCAGTACCAGCATCACAATTTGACGCTGGTGGCGCAGTCCCTGGCCAACCCAAGCTTCTTCCTCGGCCCCTGGAGGGCTCTTTCCGGAGCATCTCCTTTTCAAAATCCTTAGATCGCTCTATGGAGTTCAGCAGCTCAAGATTTTCCGAGTTCCGAGAAGGCAGCAACGAGGATGAGGACGGCAAGGCAAGGCCCTTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAATGTTGGTGCCTTAACTTCCATGGCCGGGTAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCTACCCAGCTGACAGCCAGTGCTCCTTTGCTGTCTCAGCCCGTGCCATCTGAGCAAGATAAGATAATCTTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGTTATCCGCTATCGGCCTTCCAGGCTTTCGCGATATGCTTGAGCAGCTTTGACACTAAATTGGCTTGTGAATAA 501 0.487 MHSVPASQFDAGGAVPGQPKLLPRPLEGSFRSISFSKSLDRSMEFSSSRFSEFREGSNEDEDGKARPLVLKNKPPRWHEQLQCWCLNFHGRVTVASVKNFQLIAATQLTASAPLLSQPVPSEQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2047 166 Pfam Tub family 1 161 IPR000007 -
Lele16g2047 166 SUPERFAMILY Tubby C-terminal domain-like 60 166 IPR025659 -
Lele16g2047 166 Gene3D Tubby Protein; Chain A 29 166 IPR025659 -
Lele16g2047 166 ProSitePatterns Tub family signature 2. 151 166 IPR018066 -
Lele16g2047 166 PRINTS Tubby superfamily signature 88 104 IPR000007 -
Lele16g2047 166 PRINTS Tubby superfamily signature 144 166 IPR000007 -
Lele16g2047 166 PRINTS Tubby superfamily signature 123 142 IPR000007 -
Lele16g2047 166 PRINTS Tubby superfamily signature 70 87 IPR000007 -
Lele16g2047 166 ProSitePatterns Tub family signature 1. 88 101 IPR018066 -
Lele16g2047 166 PANTHER TUBBY-RELATED 38 164 - -
Lele16g2047 166 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2047 Lele-ChrLele16 12724226 12724726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2047 1 166 TUB Transcription Factor Family AT1G25280 67.978 1.55e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele16g2047 Tub 4e-54 CL0395