Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2042 ATGTCAAAGAAGCCAAACCAGACGGAGGCTAATCGGAGGTGGAGGTGGAGGTGGAGCAAATCAGTTCGTAGAGGTGGAGCAAAGTCGAGTTTAGCGCCGCTTCTATCGTCTTCTTCCCTAGTTCGTGTTCAAGCTTCGGAAGCCGGAAATATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGGTTTCTCCCTAGGAAGCGTGCTGCTCGTCATCGTGGAAAGGCAAAGGCTTTCCCAAAGGATGATCCCACCAAGCCTTGCAGATTGACTGCCTTTATGGGTTACAAGGCTGGGATGACCCACATTGTTAGAGAAGTTGAGAAACCTGGATCAAAGCTTCATAAGAAGGAGACTTGTGAGGCTGTTACCATTGTTGAAACTCCTCCAATTGTTGTTGTTGGAGTTGTTGGATATATAAAGACACCTCGTGGACTACGCACGTTAAATACAGTCTGGGCTCAGCATCTAAGTGAGGAACTTAAAAGGAGGTTCTACAAGAACTGGTGCAAGTCTAAGAAGAAGGCATTTACCAAATATTCGAAGAAACATGAAACTGAAGAAGGAAAGAAGGATATTCAAGCGCAGCTTGAAAAATTGAAAAAATATGCATCTGTCATCCGTGTTTTGGCCCATACTCAGATACGGAAGGTGAAGGGTCTAAAGCAAAAGAAGGCACATCTGATGGAGATCCAAGTTAATGGTGGCACAATAGCACAGAAGGTGGACTACGCGTATGGCTTCTTTGAGAAGCAAGTCCCAGTGGATGCTGTTTTCCAGAAAGATGAGATGATAGATATCATTGGTGTGACAAAGGGTAAAGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTCACTCGCCTTCCTCGCAAGACACACAGGGGTCTAAGAAAGGTTGCTTGTATTGGTGCATGGCACCCTGCACGTGTTTCTTTCACAGTTGCCAGGGCTGGACAAAATGGATACCATCACCGTACTGAGTTGAATAAGAAGGTCTACAGGGTTGGCAAGGCAGGGGTAGAGTCACACTCGGCCATCACTGATTATGACAGGACTGAGAAGGACATCACTCCAATGGGTGGATTCCCTCACTATGGTGTGGTAAAGGATGATTATATTATGATTAGGGGATGCTGTGTGGGACCCAAGAAGCGTGTGCTTACCCTTCGTCAGTCATTACTGAAGCAAACTTCTCGTGTGGCCCTTGAAGAGATTAAGCTCAAGTTCATTGACACTTCCTCCAAGTTTGGACATGGTCGCTTCCAGACCACTCAGGAGAAACAGAAGTTTTTTGGTCGCTTGAAGGCCTGA 1320 0.4644 MSKKPNQTEANRRWRWRWSKSVRRGGAKSSLAPLLSSSSLVRVQASEAGNMSHRKFEHPRHGSLGFLPRKRAARHRGKAKAFPKDDPTKPCRLTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIVETPPIVVVGVVGYIKTPRGLRTLNTVWAQHLSEELKRRFYKNWCKSKKKAFTKYSKKHETEEGKKDIQAQLEKLKKYASVIRVLAHTQIRKVKGLKQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYRVGKAGVESHSAITDYDRTEKDITPMGGFPHYGVVKDDYIMIRGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2042 439 FunFam 60S ribosomal protein L3 51 127 - -
Lele16g2042 439 FunFam 60S ribosomal protein L3 94 195 - -
Lele16g2042 439 Gene3D - 133 257 - -
Lele16g2042 439 SUPERFAMILY Translation proteins 54 420 IPR009000 -
Lele16g2042 439 Pfam Ribosomal protein L3 51 420 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lele16g2042 439 ProSitePatterns Ribosomal protein L3 signature. 262 285 IPR019926 -
Lele16g2042 439 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 51 434 IPR045077 GO:0003735|GO:0005840|GO:0006412
Lele16g2042 439 Gene3D Translation factors 94 435 - -
Lele16g2042 439 FunFam Ribosomal protein L3 315 439 - -
Lele16g2042 439 FunFam 60S ribosomal protein L3 276 324 - -
Lele16g2042 439 FunFam 60S ribosomal protein L3 133 257 - -
Lele16g2042 439 Gene3D Ribosomal protein L3, domain 3 51 324 IPR044892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2042 Lele-ChrLele16 12685270 12690370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2042 51 436 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 87.824 0.0 705