Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g2008 ATGGATTTCCAAAAGATGAAGCAAGTTGATGATGGATCATCATCTTCATCTAGCAAGAAGGCAAACAAGCTGTTTGACTTGAATCTGTTGCCAGAAGAAGAAGAAGAAGAAGATACTGATGAGTTTTACATTGAAATATTTGGAAGTTTTGAAACCCGCCAAGCTACTCTGAATCTCACTGATAATAATAAAGTAGTGGATGCAAATTCAAATTCAAATTCAAATGGATTGGTTCTTCCTCCATCATTTCCTATTTCTGGTGGAGACAACAATGGTGCTTCCATCTTCCACAACACCACAATTTCATCTGCAGCAACAAAAATGGTGACACCCCCCAATCATCCTTTTGATCATAAGAAGAGAGTTCGCCACAACGAGGACTCTTCGGCCAGTACTGGCACTGCAAGGAGCTTACGTCCTCGCCGGCCGGAGCCGAACTGTGAGCGGCGAATCTGCACAAATTACAATTGCCGGACAAGAAACACTCCCATGTGGCGTAGGGGGCCTCTAGGTCCAAAGACTCTATGCAATGCATGTGGAATTCAGTATAAGAAGCAAGTGACAAGCAGAGGAAGCGACCTGGTGTGA 588 0.4388 MDFQKMKQVDDGSSSSSSKKANKLFDLNLLPEEEEEEDTDEFYIEIFGSFETRQATLNLTDNNKVVDANSNSNSNGLVLPPSFPISGGDNNGASIFHNTTISSAATKMVTPPNHPFDHKKRVRHNEDSSASTGTARSLRPRRPEPNCERRICTNYNCRTRNTPMWRRGPLGPKTLCNACGIQYKKQVTSRGSDLV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g2008 195 MobiDBLite consensus disorder prediction 8 23 - -
Lele16g2008 195 SMART GATA_3 146 194 IPR000679 GO:0006355|GO:0043565
Lele16g2008 195 MobiDBLite consensus disorder prediction 113 127 - -
Lele16g2008 195 CDD ZnF_GATA 151 194 IPR000679 GO:0006355|GO:0043565
Lele16g2008 195 Gene3D - 146 194 IPR013088 GO:0006355|GO:0008270
Lele16g2008 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 191 - -
Lele16g2008 195 MobiDBLite consensus disorder prediction 107 145 - -
Lele16g2008 195 ProSiteProfiles GATA-type zinc finger domain profile. 156 190 IPR000679 GO:0006355|GO:0043565
Lele16g2008 195 MobiDBLite consensus disorder prediction 1 36 - -
Lele16g2008 195 Pfam GATA zinc finger 152 186 IPR000679 GO:0006355|GO:0043565
Lele16g2008 195 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 7 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g2008 Lele-ChrLele16 12377108 12379783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g2008 152 186 C2C2-Gata Transcription Factor Family AT3G20750 74.286 3.73e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele16g2008 GATA 1.3e-15 CL0167