Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1988 ATGGTCGGCTTAGAGTGGGCCCAAAAGGAACCGCCAGCCCATCATAGCCGCCGTGGTGACGTGGCAGAGCATCAACATGAAGGGGCATGGACGGCATTTGACAAATGTGGAAAAGCGGGTCAACATGATATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCTGGTGACGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTTGGTCGACCTCGCCACACGGGTGTTATGGTTGGGATGGGTCAGAAGGATGCTTATGTGGGAGATGAAGCCCAGTCAAAAAGAGGTATCCTTACCTTGAAATACCCCATCGAGCATGGCATAGTAAGCAATTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAACTTCGTGTCTCCCCTGAGGAACACCCAGTACTTCTTACCGAGGCACCACTTAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATCATGTTTGAAACTTTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCTGTTCTGTCTCTCTATGCTAGTGGGCGTACAACAGGTATTGTGCTCGATTCTGGTGATGGTGTGAGCCATACAGTGCCCATTTATGAAGGGTATGCACTCCCTCATGCAATCCTACGGCTGGATCTTGCTGGACGTGACTTGACAGATCACTTGATGAAAATTCTTACTGAGAGAGGATACTCTTTCACTACCTCTGCTGAACGGGAAATTGTACGTGATATGAAGGAGAAACTAGCATATGTGGCCCTTGATTATGAGCAAGAGTTGGAAACTTGCAAGAGTAGTTCAGCAGTGGAGAAGAGCTACGAGTTGCCTGATGGACAAGTTATCACAATTGGCGCTGAGAGATTCAGATGCCCAGAAGTACTTTTCCAGCCATCTTTCATTGGTATGGAAGCTGCTGGAATTCATGAAACAACCTACAACTCTATCATGAAATGTGATGTTGATATTAGGAAGGATCTATATGGAAATATTGTGCTCAGTGGTGGCTCAACTATGTTCCCTGGGATTGCTGATCGTATGAGCAAGGAAATTACTGCCCTTGCTCCAAGTAGCATGAAGATCAAGGTGGTTGCACCTCCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATTTTGGCATCACTCAGCACCTTCCAACAGATGTGGATTTCCAAGGGTGAATATGATGAATCTGGTCCTGCAATTGTTCACCTCAAGTATATGGTTGAAATCCTGAAACTTTGGATTTTAGAAGGGATAGTTCTTGTGTACTCAATGCTTTGGCTTGAACTGTACATCTTTGGCATTTATCTGGTGAAGGATCAGAATAACACAACGCTTGATGATATTTTGCAATCTGGAAACAGCATGTTAGCGGCTGGTTACTGCATGTATGGAAGCTCTTGTACGTTAGTGCTAAGCACAGGGGATGGAGTGAATGGCTTCACACATGATCCTTCCCTTGGGGAATTCATTTTGACACAACCAAATATCAAGGTATTGAGCATGGTTGCTGATATCCACCGTACGTTGCTTTATGGTGGTATCTTCATGTACCCTGCTGATAAGGAAAGCTCAAGCGGAAAGCTCCGGTATGGTTCTGTTTTTGTTTCATTCTAA 1638 0.4536 MVGLEWAQKEPPAHHSRRGDVAEHQHEGAWTAFDKCGKAGQHDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTSAEREIVRDMKEKLAYVALDYEQELETCKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHLKYMVEILKLWILEGIVLVYSMLWLELYIFGIYLVKDQNNTTLDDILQSGNSMLAAGYCMYGSSCTLVLSTGDGVNGFTHDPSLGEFILTQPNIKVLSMVADIHRTLLYGGIFMYPADKESSSGKLRYGSVFVSF 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1988 545 CDD NBD_sugar-kinase_HSP70_actin 47 220 - -
Lele16g1988 545 MobiDBLite consensus disorder prediction 10 25 - -
Lele16g1988 545 ProSitePatterns Actins signature 2. 395 403 IPR004001 -
Lele16g1988 545 SUPERFAMILY Actin-like ATPase domain 186 413 IPR043129 -
Lele16g1988 545 ProSitePatterns Actins and actin-related proteins signature. 143 155 IPR020902 -
Lele16g1988 545 PRINTS Actin signature 154 167 IPR004000 -
Lele16g1988 545 PRINTS Actin signature 65 74 IPR004000 -
Lele16g1988 545 PRINTS Actin signature 100 122 IPR004000 -
Lele16g1988 545 PRINTS Actin signature 88 99 IPR004000 -
Lele16g1988 545 PRINTS Actin signature 179 198 IPR004000 -
Lele16g1988 545 PRINTS Actin signature 275 291 IPR004000 -
Lele16g1988 545 PANTHER ACTIN 46 406 IPR004000 -
Lele16g1988 545 Gene3D - 47 408 - -
Lele16g1988 545 Gene3D - 431 504 - -
Lele16g1988 545 MobiDBLite consensus disorder prediction 1 25 - -
Lele16g1988 545 FunFam Major actin 298 377 - -
Lele16g1988 545 FunFam Actin, muscle 219 310 - -
Lele16g1988 545 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 508 538 IPR044015 -
Lele16g1988 545 Pfam Actin 43 412 IPR004000 -
Lele16g1988 545 SUPERFAMILY Actin-like ATPase domain 43 192 IPR043129 -
Lele16g1988 545 Gene3D Actin; Chain A, domain 4 219 310 - -
Lele16g1988 545 Gene3D - 505 540 - -
Lele16g1988 545 SUPERFAMILY Carbohydrate phosphatase 439 538 - -
Lele16g1988 545 FunFam Actin, alpha skeletal muscle 40 199 - -
Lele16g1988 545 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 439 502 IPR033391 -
Lele16g1988 545 ProSitePatterns Actins signature 1. 92 102 IPR004001 -
Lele16g1988 545 FunFam Putative actin-related protein 5 378 406 - -
Lele16g1988 545 Gene3D - 177 377 - -
Lele16g1988 545 SMART actin_3 44 414 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1988 Lele-ChrLele16 12161824 12170424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1988 39 412 Cytoskeleton Gene Families AT5G09810 95.455 0.0 739