Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1984 ATGTTTGAGAGATTTGTTTTTCAAGAAAGTCAGAATGTGATATTGAATCGCTTACTCTTTTCCTCCCATAAAGGTCATTATTGTGCAAGGACTAGCAAAATGGACAGAAGTGTTGGAATTGTGATTGATGAGTCGAGCATCATGAAAGCAGTTGAACCATTGCCAGAGGATTTTGATCCAACGGCTGTGATTAAGGATCCTGTACCACCCATAGTTGAAAATAATGGAAATGGTCATGCGGTGAATAAGATAACTAAGGATAGAAGTAAAAGAGAGATAGTACTTGGAAGGAATGTTCATACCACATGCTTGGAAGTCACAGAACCAGATGCTGATGATGAGGTGACAGGGGACAGGGAAGCTTATATGGCAAGTGTTTTGGCTAGATACAGGAAATCTCTGATGGAAAGGACGAAGCATCATTTAGGTTATCCCTATAATTTGGATTTCGACTATGGTGCCCTTGCCCAGCTGCAGCACTTTTCTATAAACAACTTGGGAGATCCATTTATTGAAAGTAACTATGGCGTCCACTCACGGCAGTTTGAAGTAGGTGTTTTGGATTGGTTTGCCCGATTATGGGAGATTGAGAAAAATGAGTACTGGGGCTATATTACAAATTGTGGCACAGAAGGGAATCTACATGGCATTCTTGTTGGGAGAGAGGTTTTCCCAGACGGGATACTGTATACCTCAAGGGAAACACATTATTCTATTTTCAAAGCTGCTCGTATGTACAGAATGGAATGTGTGAAAGTTGACACACACTGTACTGGAGAGATTGATTGTGATGATTTCAAGGCCAAGATTATTCGTAACAAAGACAAGCCAGCAATTGTAAATGTGAATATAGGCACAACTGTCAAAGGAGCTGTGGATGATCTTGATCTAGTAATAAAGACACTTGAAGAAGCAGGATTTTCGCACGACCGATTCTACATCCACTGTGATGGAGCTTTGTTTGGTCTGATGATGCCTTTTGTCAAGCGCGCTCCTAAAGTCTCCTTTAAGAAGCCTATAGGCAGTGTGAGTGTATCTGGCCACAAATTTGTGGGGTGCCCTATGCCTTGTGGTGTGCAGATAACAAGATTGGAGCACGTCAATGTTCTCTCTAGGAATGTGGAGTACCTAGCTTCTAGGGATGCCACAATCATGGGCAGTCGAAACGGACACGCTCCCATCTTCCTCTGGTACACCCTAAACCGAAAGGGATACCGAGGTTTCCAGAAAGAAGTACAGAAATGCTTGAGGAATGCACATTACTTGAAAGACCGCCTCAGGGACGCGGGGATCGGGGCAATGCTTAATGAGCTGAGCAGCACAGTTGTGTTTGAGCGGCCACACGATGAGGAGTTTACACGCAGGTGGCAACTAGCATGCCAAGGCAACATTGCTCATGTTGTGGTGATGCCAAACATTACAATCGAGAAGCTCGACGATTTTCTAGAGGAGCTTGTTCAGAAACGGGCCAAGTGGTTTGAAGATGGCAAGTGTCAGCCCCGCTGTATTGCGTCTTATGTGGGTGAAAAGAGTTGCTTCTGTGCCTTGCACAAGTGA 1557 0.4406 MFERFVFQESQNVILNRLLFSSHKGHYCARTSKMDRSVGIVIDESSIMKAVEPLPEDFDPTAVIKDPVPPIVENNGNGHAVNKITKDRSKREIVLGRNVHTTCLEVTEPDADDEVTGDREAYMASVLARYRKSLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYTSRETHYSIFKAARMYRMECVKVDTHCTGEIDCDDFKAKIIRNKDKPAIVNVNIGTTVKGAVDDLDLVIKTLEEAGFSHDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVNVLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLRDAGIGAMLNELSSTVVFERPHDEEFTRRWQLACQGNIAHVVVMPNITIEKLDDFLEELVQKRAKWFEDGKCQPRCIASYVGEKSCFCALHK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1984 518 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 342 363 IPR021115 GO:0016831
Lele16g1984 518 Gene3D - 157 400 IPR015421 GO:0003824
Lele16g1984 518 Gene3D Aspartate Aminotransferase, domain 1 401 489 IPR015422 GO:0003824
Lele16g1984 518 Pfam Pyridoxal-dependent decarboxylase conserved domain 228 439 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lele16g1984 518 FunFam Serine decarboxylase 1 157 400 - -
Lele16g1984 518 SUPERFAMILY PLP-dependent transferases 137 489 IPR015424 -
Lele16g1984 518 PANTHER - 82 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1984 Lele-ChrLele16 12135917 12138501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1984 241 424 Calmodulin-binding Proteins AT1G65960 26.425 9.50e-09 55.5