Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1979 ATGTTTCTGAGTAGAAACCCACTCGAAGAGGCTGCGCTTCACTGCTCAACATCGTCGTCACTGAGAGGCAAAGCCCAGCAAGTATGGGTACCTGAAGAACGAAGAACCCCATCATCATCATCATCATCAATGGCTGCTTCTGGTGGTTGCAGAATGAAGAACACAGACTGTACTTCCCTCCCTCAGCTTAGCATTCATTATACATTGCATATACATGGGACATGTCTACAGTCCTACAAAAAGCGGATCATTGCACCACTGTTTGAAATGTCGGAAGTGGATGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTGAAGGATGCATTTGAAAAGTTCGGCAAACTTCTTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGGATGGATTTAGATGGTCGAAATATCACTGTTGATAAAGCTCAGCCTCAACAAGGATCTACTAGAGATGATGGTGGTGATCGTTACCGTGAAAGGGGTCGCGATCGTGACCGAGATTATAGAGGTGGTCGAAGCTCCAATGGTGGTGAATGTTTTAAATGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGAGCAGGAGGGGGTAGGCCTGGTGGCAGGGAAAGTAGATATGGTGGCAGGAGTGGTGGTGGTGGTCACTATGGTCCTGATAGGAGCACAGATCGTTATTCTGGTGGGCGCAACAGGGACTCAGGTAGTCATGGAGATTCAGGAACTGATCGGTACCCTCGTGATCGTGCTGGACCTTATGAACGACGAGGATTGGGAGGCTTTCGCTCTGGATAG 891 0.4759 MFLSRNPLEEAALHCSTSSSLRGKAQQVWVPEERRTPSSSSSSMAASGGCRMKNTDCTSLPQLSIHYTLHIHGTCLQSYKKRIIAPLFEMSEVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEAMNGMDLDGRNITVDKAQPQQGSTRDDGGDRYRERGRDRDRDYRGGRSSNGGECFKCGKPGHFARECPSEGAGGGRPGGRESRYGGRSGGGGHYGPDRSTDRYSGGRNRDSGSHGDSGTDRYPRDRAGPYERRGLGGFRSG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1979 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Lele16g1979 296 Pfam Zinc knuckle 208 224 IPR001878 GO:0003676|GO:0008270
Lele16g1979 296 MobiDBLite consensus disorder prediction 181 202 - -
Lele16g1979 296 ProSiteProfiles Zinc finger CCHC-type profile. 209 224 IPR001878 GO:0003676|GO:0008270
Lele16g1979 296 MobiDBLite consensus disorder prediction 24 48 - -
Lele16g1979 296 SUPERFAMILY RNA-binding domain, RBD 89 205 IPR035979 GO:0003676
Lele16g1979 296 SUPERFAMILY Retrovirus zinc finger-like domains 202 225 IPR036875 GO:0003676|GO:0008270
Lele16g1979 296 MobiDBLite consensus disorder prediction 32 48 - -
Lele16g1979 296 Gene3D - 205 260 - -
Lele16g1979 296 MobiDBLite consensus disorder prediction 164 296 - -
Lele16g1979 296 SMART rrm1_1 97 170 IPR000504 GO:0003723
Lele16g1979 296 Gene3D - 88 204 IPR012677 -
Lele16g1979 296 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 90 289 - -
Lele16g1979 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Lele16g1979 296 SMART c2hcfinal6 208 224 IPR001878 GO:0003676|GO:0008270
Lele16g1979 296 MobiDBLite consensus disorder prediction 255 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1979 Lele-ChrLele16 12101869 12110212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1979 82 155 C2H2 Transcription Factor Family AT2G19380 38.158 4.46e-11 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0517 13 17358034 17361133 Lele16g1979 16 12101869 12110212 hybridization
Lele14g0440 14 16055783 16056669 Lele16g1979 16 12101869 12110212 hybridization