Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1977 ATGACGAGCAAGATCTGGAGAGGGGCACTAGGGGCGGTGAAGGATCAAACAAGCATCGGTTTAGCCAAGGTAGGAAGCACTACCACCCTTGCTGACCTCGATGTCGCCATTGTTAAGGTCACCAAGCACAATGAGGCCCCTGGCGATGAGAAACACGTTAGGGAGATCCTTAGCTTAACAAGCTATTCCCGCTCCCATGTCAACTCCTGTGTCTCTGCCATCTCTCGTCGTCTCAGCCGAACGCGAAGCTGGACCGTCGCCTTAAAGTCCCTTGTCCTCATCCAACGACTCCTCCAAGAGGGTGATCTTGCCTATGAGCAGGAGATCTTCTTCGCCACACGGCGGGGAACTCGGCTCCTCAACATGTCAGACTTTCGGGACAGCTCAACAGCCAACTCCTGGGACTTCTCAGCGTTCGTGAGGATGTATGCATTGTATTTGGACGAGAAGTTGGAGTATAAGATGCTGAATAAGAGAGGAAGAAGAAGCTCATTCGGATATGAGGAAGAAGATGAGGATGCAAGGGATAATAGGGATAGATATATGCTTACATATAGGGATAGAGACAAAGACAGAGAAGGAGACAGAGACAAGAATAGATCAGAAAGCATTGGGAGGTCTACACCATTGCGTGAGATGAGGACAGAGGCATTGTTCTCTAAAATGCAACATTTACAATTATTACTTGAGAGGTTCTTGGCTTGTCGTCCCACAGGAGAAGCAAAGAACCATCGAATTGTGATGGTGGCTCTCTACCCTATATTGAAGGAGAGTTTTCAAATATATTATGAAATGACAGAAATTCTAGGTGTCTTAATCGACCGTTTCGAGGAAATGGAGGTTCAAGATTGCATCAAGGCTTACAAAATTTTCTGTCGAGTTGGAAAGCAGTATGATGAGCTAGACCTCTTTTACACATGGAGTACGAGTATGGGAATTGCCCGCTCTTCTGAGTTCCCGGAGATCGAAAGGATCACCTCAAAGAAACTCGAGATCATGGATGATTTCATTAGAGAGAGAACTGCCATGGCAAACTCCAAAAGAAATGCAAAACCCCAAGAAGAGAATATTGAAGAACCAGAAAAGCCAGAGCCACCACAAGAGGATATGAATGCAATCAAGGCACTACCACCACCAGAGACAAAAGAGGAACCGATAGAAGAGCCTAAAATGGAGGAACCAAAAGTTGTACAAACAGTAGGTGACTTGCTGCACTTAGGAGATGATGACATGGTGACAAGAGAAGATCATGAAAATAAACTAGCCTTGGCACTATTTGACGGTGCAGGACCGACGACTTCTGAGGCATCTAGCACTACACTAGCTCTTCCGTGGCATGCTGTTGAAGATGGTTCAGATTGGGAAAAAACATTGGTGGAATCAGCTAGCAGATTGTCAAACCAGAAGCCAACATTAGGAGGTGGGTTCGATACACTGTTGTTGGATGGGATGTATAACCAAGCAGCTACAAATGTAACCATTCAAGGCTATAACTACGGTATTGGAAGCGCGAGCAGTATGGCTCAAGGTTCAGCCGGAAGGTCTCCAATGCTCGCCCTGCCCGCACCACCGACAGCTTCTTCAAGATGGGTTAACAATGCAGACCCATTTGCAGCTTCAATGGCGGTGGCACCTCCAGCTTATGTTCAAATGTCAGAGATAGAGAAAAAGCAGAGATTAATGACAGAGGAACAACTATTGTGGCAGCAATATCAAAGAAATGGCATGCAAGGACATGTTGGAATGACAAGGATGCAACCTAGTAATTACATGGGAGGGTTCCCAACAAACTTTTATTATCACTAA 1806 0.4585 MTSKIWRGALGAVKDQTSIGLAKVGSTTTLADLDVAIVKVTKHNEAPGDEKHVREILSLTSYSRSHVNSCVSAISRRLSRTRSWTVALKSLVLIQRLLQEGDLAYEQEIFFATRRGTRLLNMSDFRDSSTANSWDFSAFVRMYALYLDEKLEYKMLNKRGRRSSFGYEEEDEDARDNRDRYMLTYRDRDKDREGDRDKNRSESIGRSTPLREMRTEALFSKMQHLQLLLERFLACRPTGEAKNHRIVMVALYPILKESFQIYYEMTEILGVLIDRFEEMEVQDCIKAYKIFCRVGKQYDELDLFYTWSTSMGIARSSEFPEIERITSKKLEIMDDFIRERTAMANSKRNAKPQEENIEEPEKPEPPQEDMNAIKALPPPETKEEPIEEPKMEEPKVVQTVGDLLHLGDDDMVTREDHENKLALALFDGAGPTTSEASSTTLALPWHAVEDGSDWEKTLVESASRLSNQKPTLGGGFDTLLLDGMYNQAATNVTIQGYNYGIGSASSMAQGSAGRSPMLALPAPPTASSRWVNNADPFAASMAVAPPAYVQMSEIEKKQRLMTEEQLLWQQYQRNGMQGHVGMTRMQPSNYMGGFPTNFYYH 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1977 601 Pfam ANTH domain 32 339 IPR011417 GO:0005543
Lele16g1977 601 CDD ANTH_N_AP180_plant 33 152 - -
Lele16g1977 601 FunFam putative clathrin assembly protein At2g25430 205 349 - -
Lele16g1977 601 MobiDBLite consensus disorder prediction 344 393 - -
Lele16g1977 601 FunFam Clathrin coat assembly protein 2 157 - -
Lele16g1977 601 SUPERFAMILY ENTH/VHS domain 32 153 IPR008942 -
Lele16g1977 601 Gene3D - 7 157 IPR008942 -
Lele16g1977 601 PANTHER CLATHRIN ASSEMBLY PROTEIN 6 561 IPR045192 GO:0048268|GO:0072583
Lele16g1977 601 MobiDBLite consensus disorder prediction 344 368 - -
Lele16g1977 601 SMART enth_2 31 161 IPR013809 -
Lele16g1977 601 ProSiteProfiles ENTH domain profile. 25 161 IPR013809 -
Lele16g1977 601 SUPERFAMILY GAT-like domain 208 339 - -
Lele16g1977 601 Gene3D ANTH domain 204 356 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1977 Lele-ChrLele16 12094760 12096779 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0451 14 16154547 16160460 Lele16g1977 16 12094760 12096779 CCT
Lele15g1936 15 12091453 12098227 Lele16g1977 16 12094760 12096779 CCT
Lele16g1970 16 12029027 12032556 Lele16g1977 16 12094760 12096779 CCT
Lele16g1977 16 12094760 12096779 Lele16g1977 16 12094760 12096779 ECH
Lele13g0519 13 17371825 17373478 Lele16g1977 16 12094760 12096779 hybridization
Lele14g0442 14 16075857 16078332 Lele16g1977 16 12094760 12096779 hybridization