Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1972 ATGTGTCGTATGTCATACGATCCATCAATGATTTTGTTTTTTCTGGTGTTTTTGCTTCAGTTTTCACCTTATCAACATAAGATTTCCAACTGCTCCATACCAATTCCAGGCTCATATCTGGAGCTTTATAGTAACAATATAAGTGGAAAAATCCCACCTGAATTTGGAAATTTGACAAATTTGGTGAGCTTGGATCTGTACGCCAATCGCATAGCTAGAGACAATGCTCTGGATACCTTGTGTTTATACTGGGATGCTAATGGAATCTTTGTCTTGCTCTCTGGGAATGATGTAGTGGGAGCATCTAGTGAATGGCGTCTCAACAATAACAACTTGACTGGAGCCATTCCCATGACCTTGACTAATGTTAATTCACTGCAATTCCTTGATCTTTCAAATAACCAGCTAGTAGGAGAAATCCCAACCAATGGTTCATTTCAAGCGTTTACTGCCCTCAGTTTTAAAGGTAATCCTCGTTTGAAACCACTAAACATTACACCTGGACCAATTTCACCAACGCCGCCACCATCTTCTTCAGCTAATAGTGCTACTAGAGCTATTGCTGGAGGAGTTGCTGCTCTAATGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGCCGGAAGAGGAGACAGCAAGATTATTTCTTTGATGTTCCTGGTAAGTTGAATAATGGAAAAGATGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGCGAGCTGCAAGTTGCAACCGACAACTTTAGTAACAAAACCATTCTGGGTAGAGGTGGATTTGGTAAGGTTTACAAAGGACGGTTAACTGATGGGTCTCTAGTTGCAGTGAAAAGACTTAAAGAGGAACGCACTCAGGGTGGAGAGCTGCAATTTCAAACAGAAGTAGAAATGATCAGCTTGGCTGTCCATCGTAATTTGCTCCGGCTGCGTGGTTTTTGCATGACACCAACTGAACGGTTGCTTGTGTATCCTTACATGGCTAATGGTAGTGTGGCATCGTGTTTACGAGATACTCATGTTACCACTGCTGTGCGTGGTACAATCGGGCACATTGCCCCAGAATACATCTCCACGGGAAAGTCATCGGAGAAGACCGATGTTTTTGGTTATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGTCTTTTGATCTGGCTCGACTTGCCAACAACGATGATGTCATGTTACTTGATTGGGTGACAGGGCTTTTGAAAGACAAGAGATTGGAAACACTAGTGGATGCTGATTTGCAGGGTGAATATAATGAAGAGGAGGTAGAGCAACTAATCCAAGTGGCCCTGCTCTGCACACAAAGCTCGGCTATGGAAAGACCAAAAATGTCTGACGTGATAAGGATGCTTGAAGGTGATGGTTTAGCTGAAAAATGGGATCAATGGCAGAAAGACGAGATATATCGACGAGATAATCAAACCCTTGATGGTTTAGCTAAAAAATGGGATCAATGGCAGAAAGACGAGATATATCGGCGAGATAATCAAACCCTTCTCCCTAACCCCGATTGGCGGATTGTCGACTCAGCTTCACATATCCCCCCAGATGAACTGTCAGGTCCCAGATGA 1599 0.4346 MCRMSYDPSMILFFLVFLLQFSPYQHKISNCSIPIPGSYLELYSNNISGKIPPEFGNLTNLVSLDLYANRIARDNALDTLCLYWDANGIFVLLSGNDVVGASSEWRLNNNNLTGAIPMTLTNVNSLQFLDLSNNQLVGEIPTNGSFQAFTALSFKGNPRLKPLNITPGPISPTPPPSSSANSATRAIAGGVAALMFAAPAIALAYCRKRRQQDYFFDVPGKLNNGKDAEEDPEVHLGQLKKFPLRELQVATDNFSNKTILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRDTHVTTAVRGTIGHIAPEYISTGKSSEKTDVFGYGVMLLELITGQRSFDLARLANNDDVMLLDWVTGLLKDKRLETLVDADLQGEYNEEEVEQLIQVALLCTQSSAMERPKMSDVIRMLEGDGLAEKWDQWQKDEIYRRDNQTLDGLAKKWDQWQKDEIYRRDNQTLLPNPDWRIVDSASHIPPDELSGPR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1972 532 Gene3D Phosphorylase Kinase; domain 1 224 328 - -
Lele16g1972 532 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Lele16g1972 532 Gene3D Ribonuclease Inhibitor 27 169 IPR032675 -
Lele16g1972 532 ProSiteProfiles Protein kinase domain profile. 254 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1972 532 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 38 470 - -
Lele16g1972 532 FunFam Somatic embryogenesis receptor kinase 1 224 330 - -
Lele16g1972 532 Pfam Protein tyrosine and serine/threonine kinase 349 460 IPR001245 GO:0004672|GO:0006468
Lele16g1972 532 Pfam Protein tyrosine and serine/threonine kinase 257 343 IPR001245 GO:0004672|GO:0006468
Lele16g1972 532 SUPERFAMILY Protein kinase-like (PK-like) 239 463 IPR011009 -
Lele16g1972 532 Gene3D Transferase(Phosphotransferase) domain 1 329 480 - -
Lele16g1972 532 SUPERFAMILY L domain-like 39 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1972 Lele-ChrLele16 12048146 12052561 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1972 39 481 Receptor kinase-like Gene Family AT4G33430 51.356 7.41e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele16g1972 PK_Tyr_Ser-Thr 3.2e-08 CL0016