Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1970 ATGAATGGTGGTCCGAGGCAATTCATATATGGAGTGTCGAATGTGGGCCCAGGCACTCGGTTTTCAAGTTTGGTTCCTGGAGCCCCCAGTTTTCCTGTGCCTATTCTAACTGCAGCTTCTTTCAATTCGTCTGTGTTTGAGGCAATTGGAGAGGTACATCCAACTGCGGGTTCTGATGGTGCTTTTAACTTTTGGGACAAGGATAGTAAACAGAGACTTAAGGCCATGTTAAGGTGCAGTCAACCTATTCCATGCAGTGCCTTCAACAATGATGGTTCAATCTTTGCTTACTCGGTATGCTATGACTGGAGTAAAGGGGCTGAAAATCATAATCCTGCGACAGCAAAGAATTACATTTTCCTGCACTTGCCACAGGAATCTGAGGTTAAAGGCAAACCTAGACTTGGAACTACTGGGAGGAAGTAG 426 0.4531 MNGGPRQFIYGVSNVGPGTRFSSLVPGAPSFPVPILTAASFNSSVFEAIGEVHPTAGSDGAFNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKNYIFLHLPQESEVKGKPRLGTTGRK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1970 141 PANTHER MRNA EXPORT FACTOR AND BUB3 40 128 - -
Lele16g1970 141 Gene3D - 32 135 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1970 Lele-ChrLele16 12029027 12032556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1970 7 55 Glycoside Hydrolase AT5G64570 65.306 4.68e-13 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1970 16 12029027 12032556 Lele13g0519 13 17371825 17373478 CCT
Lele16g1970 16 12029027 12032556 Lele14g0442 14 16075857 16078332 CCT
Lele16g1970 16 12029027 12032556 Lele15g1955 15 12275538 12285321 CCT
Lele16g1970 16 12029027 12032556 Lele16g1977 16 12094760 12096779 CCT
Lele16g1970 16 12029027 12032556 Lele16g1970 16 12029027 12032556 ECH
Lele13g0548 13 17717281 17724024 Lele16g1970 16 12029027 12032556 hybridization
Lele14g0451 14 16154547 16160460 Lele16g1970 16 12029027 12032556 hybridization