Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1969 ATGGGCGCTTTACTCCTTTGTGCAATTTTAGTGTTTGATTTGGTGCTAAATGTTTCCGGTAATGCCGAAGGTGATGCCCTGAATGCATTTAAGACCAACGTAGCTGATCCAAACAATGTTCTTCAAAGTTGGGATGCTACCCTTGTCAATCCTTGCACGTGGTTTCATGTTACATGCAATACGGATAATAGCGTAACCCGTGTTGATCTTGGAAACGCCAACCTTTCTGGTGAACTAGTTGCAAATCTTGGTCAACTCCCAAACTTGCAGTATCTGGAGCTTTATAGTAACAATATAACTGGAAAAATCCCACCTGAATTTGGAAATTTGACAAATTTGGTGAGCTTGGATCTGTACGCCAATCGCATAGCTAGTAACATCCCAGAAACATTGGACAAGCTTCAAAAACTACGTTTCCTGCGTCTCAACAATAACAACTTGACTGGAGCCATTCCCATGACCTTGACTAATGTTAATTCACTGCAAGTCCTTGATCTTTCAAATAACCAGCTAGTAGGAGAAATCCCGTCCAATGGTTCATTTCTAGCGTTTACTGACCTCAGTTTTAAAGGTAATCCTCGTTTGAAACCACTAAACATTACACCTGGACCAATTTCACCAACGCCGCCGCCATCTTCTTCAGCCAATAGTGCTACTAGAGCTATTGCTGGAGGAGTTGCTGCTGCTGCTGCTCTAATGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGCCGGAAGAGGAGACAGCAAGATTATTTCTTTGATGTTCCTGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGCGAGCTGCAAGTTGCAACTGACAACTTTAGTAACAAAAACATTCTGGGTAGAGGTGGATTTGGTAAGGTTTACAAGGGACGGTTAACTGATGGGTCTCTAGTTGCAGTGAAAAGACTTAAAGAGGAACGCACTCAGGGTGGAGAGCTGCAATTTCAAACAGAAGTAGAAATGATCAGCTTGGCTGTCCATCGTAATTTGCTCCGGCTGCGTGGTTTTTGCATGACACCAACTGAACGGTTGCTTGTGTATCCTTACATGGCTAATGGTAGTGTGGCATCGTGTTTACGAGACCGCCCGGATACAAAGCCCCCACTTGAATGGCCTATACGGAAACGAATCACACTGGGAGCTGCAAGGGGGCTTGCTTATTTACATGATCATTGTGATCCAAAGATCATTCACCGTGATGTTAAAGCTGCCAATATATTATTGGATGAGGAATATGAAGCAGTTGTTGGGGACTTCGGCTTGGCAAAACTCATGGATTACAAAGATACTCATGTTACCACTGCTGTGCGTGGTACAATCGGGCACATTGCCCCAGAATACCTCTCCACGGGAAAGTCATCAGAGAAGACCGATGTTTTTGGTTATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTTGCTCGACTTGCCAACAATGATGATGTCATGTTACTTGATTGGGTGAAAGGGCTTTTGAAAGACAAGAGATTGGAAACACTAGTGGATGCTGATTTGCAGGGGGAATATAATGAAGAGGAGGTAGAGCAACTAATCCAAGTGGCCCTGCTCTGCACACAAAGCTCGGCTATGGAAAGACCAAAAATGTCTGACGTGGTAAGGATGCTTGAAGGTGATGGTTTAGCTGAAAAATGGGATCAATGGCAGAAAGACGAGATGTATCGACGAGATAATCAAACCCTTCTCCCTAATCCTAATTGGCCGATTGTCGACTCGGCTTCACATATTCCCCCAGATGAACTGTCAGGTCCCAGATGA 1824 0.4441 MGALLLCAILVFDLVLNVSGNAEGDALNAFKTNVADPNNVLQSWDATLVNPCTWFHVTCNTDNSVTRVDLGNANLSGELVANLGQLPNLQYLELYSNNITGKIPPEFGNLTNLVSLDLYANRIASNIPETLDKLQKLRFLRLNNNNLTGAIPMTLTNVNSLQVLDLSNNQLVGEIPSNGSFLAFTDLSFKGNPRLKPLNITPGPISPTPPPSSSANSATRAIAGGVAAAAALMFAAPAIALAYCRKRRQQDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDNFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRDRPDTKPPLEWPIRKRITLGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANNDDVMLLDWVKGLLKDKRLETLVDADLQGEYNEEEVEQLIQVALLCTQSSAMERPKMSDVVRMLEGDGLAEKWDQWQKDEMYRRDNQTLLPNPNWPIVDSASHIPPDELSGPR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1969 607 ProSiteProfiles Protein kinase domain profile. 284 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1969 607 SUPERFAMILY Protein kinase-like (PK-like) 264 559 IPR011009 -
Lele16g1969 607 SUPERFAMILY L domain-like 23 212 - -
Lele16g1969 607 Pfam Leucine Rich repeats (2 copies) 87 126 IPR025875 -
Lele16g1969 607 FunFam Somatic embryogenesis receptor kinase 1 253 360 - -
Lele16g1969 607 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Lele16g1969 607 FunFam Somatic embryogenesis receptor-like kinase 1 361 578 - -
Lele16g1969 607 SMART LRR_typ_2 110 133 IPR003591 -
Lele16g1969 607 SMART LRR_typ_2 86 109 IPR003591 -
Lele16g1969 607 SMART LRR_typ_2 158 183 IPR003591 -
Lele16g1969 607 SMART LRR_typ_2 134 157 IPR003591 -
Lele16g1969 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Lele16g1969 607 Gene3D Transferase(Phosphotransferase) domain 1 361 578 - -
Lele16g1969 607 SMART serkin_6 284 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1969 607 Pfam Protein kinase domain 285 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1969 607 FunFam Somatic embryogenesis receptor kinase 1 19 208 - -
Lele16g1969 607 MobiDBLite consensus disorder prediction 588 607 - -
Lele16g1969 607 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 568 - -
Lele16g1969 607 Pfam Leucine Rich Repeat 160 177 IPR001611 GO:0005515
Lele16g1969 607 Gene3D Ribonuclease Inhibitor 20 201 IPR032675 -
Lele16g1969 607 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Lele16g1969 607 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1969 Lele-ChrLele16 12019386 12026567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1969 9 607 Receptor kinase-like Gene Family AT4G33430 73.190 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele16g1969 Pkinase 2.2e-44 CL0016