Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1964 ATGAGCCTGAAGAGCACTAACAGGAAAATGAGGAGGGGTTTCATGTGCCACTCTCAGGCATCAACTTCGGTGTGCATGAGCACCGGTGACCGTCGGTCGGTTGTAGTGCCTAGAAGGCCTGACAGAAGCATTTTTCTTGATGATACCAGACTCATCAACAATCCCAAGTACTCCAGACTTGCTGAGCCTCGCAGGTTCGACCCTGTTGATAAGAAAGCATTGTCTATTGCTGTGCCAAAGATCAAGCAGAAGAGGGAGCGAGGTCAAGATCAAGAAGAGGAGCCAAGGGCATTTCATCAAACACCTACTGATCAAGTCTTTCAGGTGGTTGTGATGAAGGTGGCACTTCATTGTCAAGGTTGCGCTGGCAAAGTTAGAAAGCATCTCTCTAAAATGGAAGGGGTGACATCGTTCAGCATAGATTTAGAGACGAAGAGGGTGACAGTGATGGGGCACATATCTCCTGTGGGAGTGCTTGAGAGCATATCCAAGGTCAAAAGGGCAGAGTTCTGGCCTTGCTGA 522 0.4866 MSLKSTNRKMRRGFMCHSQASTSVCMSTGDRRSVVVPRRPDRSIFLDDTRLINNPKYSRLAEPRRFDPVDKKALSIAVPKIKQKRERGQDQEEEPRAFHQTPTDQVFQVVVMKVALHCQGCAGKVRKHLSKMEGVTSFSIDLETKRVTVMGHISPVGVLESISKVKRAEFWPC 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1964 173 ProSiteProfiles Heavy-metal-associated domain profile. 108 165 IPR006121 GO:0046872
Lele16g1964 173 CDD HMA 106 164 IPR006121 GO:0046872
Lele16g1964 173 MobiDBLite consensus disorder prediction 77 99 - -
Lele16g1964 173 PANTHER OS08G0405700 PROTEIN 14 173 IPR044526 -
Lele16g1964 173 SUPERFAMILY HMA, heavy metal-associated domain 106 166 IPR036163 GO:0046872
Lele16g1964 173 Pfam Heavy-metal-associated domain 111 164 IPR006121 GO:0046872
Lele16g1964 173 Gene3D - 106 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1964 Lele-ChrLele16 11976261 11979432 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1964 16 11976261 11979432 Lele13g0552 13 17766741 17768610 CCT
Lele16g1964 16 11976261 11979432 Lele14g0454 14 16202813 16204093 CCT
Lele16g1964 16 11976261 11979432 Lele15g1931 15 12027440 12028672 CCT
Lele16g1964 16 11976261 11979432 Lele16g1961 16 11936236 11939630 CCT
Lele14g0462 14 16228851 16239601 Lele16g1964 16 11976261 11979432 CCT
Lele15g1925 15 11990080 11997317 Lele16g1964 16 11976261 11979432 CCT
Lele16g1954 16 11904595 11912661 Lele16g1964 16 11976261 11979432 CCT
Lele16g1964 16 11976261 11979432 Lele16g1964 16 11976261 11979432 ECH
Lele13g0549 13 17728997 17729719 Lele16g1964 16 11976261 11979432 hybridization
Lele14g0452 14 16170478 16173019 Lele16g1964 16 11976261 11979432 hybridization