Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1962 ATGGCAGCGAACACATCCCTCATTCTCTGCCTTTTGGCCATCTCGGCCGTCGCTCTGTCTCACGCCGCGTCGTCTTCTGCACACCACGCGCCTTCGCCTTCACCGGATTGTATGAGCCTGATATCGAACATGGTGGATTGCTTGCCCTTCGTCTCCAGCGGAAGCACCACCATGAAGCCACAGGGTACATGCTGCTCTGGCTTCAAGACTGTGCTTAAGACCAGCCCTGATTGTATCTGTCAAGCTTTCAAGAGCAGTTCTCAGTATGGTGTCTCTTTGAATATCACAAAGGCCATGACTCTTCCTGCTGCTTGCAAAGTCTCTGCCCCTTCTTTTTCTAACTGTGGATTGTCGGTAACTCCTTCTGCTGCTCCTGGCATGTCTCCATCGTCTTCTGCTGCCGCGCCCGGAATGTCTGGTTCAGGGACAGCAAGCGAGCTATCTCCAACAGCAGCACCGGTGCCATCTCCAGGGAACTCAGCACCATCCATGGTCCCAATTTCAGCAGGATCATTGCTTGTCTGCATACTTGCAGCCATAATCTGA 546 0.5311 MAANTSLILCLLAISAVALSHAASSSAHHAPSPSPDCMSLISNMVDCLPFVSSGSTTMKPQGTCCSGFKTVLKTSPDCICQAFKSSSQYGVSLNITKAMTLPAACKVSAPSFSNCGLSVTPSAAPGMSPSSSAAAPGMSGSGTASELSPTAAPVPSPGNSAPSMVPISAGSLLVCILAAII 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1962 181 Gene3D - 22 124 IPR036312 -
Lele16g1962 181 PRINTS Plant phospholipid transfer protein signature 59 73 IPR000528 GO:0006869|GO:0008289
Lele16g1962 181 PRINTS Plant phospholipid transfer protein signature 92 109 IPR000528 GO:0006869|GO:0008289
Lele16g1962 181 PRINTS Plant phospholipid transfer protein signature 36 52 IPR000528 GO:0006869|GO:0008289
Lele16g1962 181 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 16 156 IPR043325 -
Lele16g1962 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 117 IPR036312 -
Lele16g1962 181 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 34 114 - -
Lele16g1962 181 MobiDBLite consensus disorder prediction 126 154 - -
Lele16g1962 181 MobiDBLite consensus disorder prediction 126 160 - -
Lele16g1962 181 CDD AAI_LTSS 44 107 - -
Lele16g1962 181 Pfam Probable lipid transfer 22 115 IPR016140 -
Lele16g1962 181 SMART aai_6 37 115 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1962 Lele-ChrLele16 11945799 11947685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1962 25 181 Lipid Metabolism Gene Families AT5G64080 53.459 4.39e-47 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0549 13 17728997 17729719 Lele16g1962 16 11945799 11947685 CCT
Lele14g0452 14 16170478 16173019 Lele16g1962 16 11945799 11947685 CCT
Lele15g1935 15 12079212 12081567 Lele16g1962 16 11945799 11947685 CCT
Lele16g1962 16 11945799 11947685 Lele16g1962 16 11945799 11947685 ECH