Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1961 ATGAGAATTTCTGTTTCAGTAGAAATTCTAGAAGGATCCTCGCAAGTTTTTCTTGTGAAGCAATCTGTAATCTGTCTACTGTCTCTGTTATTTTCTCGAGAAAAGTTTCAGAGTCAAGAAGAAATGGCAGGTGCTGCCACATCTGGTGCTGTGTTGAATGGGTTGGGATCTTCCTTCTTGTGTGGAGGAAAGAGAAGCCAATCTCTTTTCTCTGCTAAATCTAATAATAATGCTGTTAGCCCTAAGAGGTTCTTTGTTGCTGCTGCGGCTGCTGCTCAACCCAAGAAATCTTGGATCCCTGCTGTTAGAGGTGGTGGCAACTTCATCGACCCTGAATGGCTAGATGGCTCGCTGCCAGGTGACTATGGCTTTGACCCTCTTGGCCTAGGCAAGGATCCAGCATTCCTCAAGTGGTACAGAGAAGCAGAGCTCATCCATGGCCGGTGGGCGATGGCGGCGGTGGTCGGAATCTTTGTTGGCCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCCGGAGCTGACCCGAATGCCATTGCTCCTTTCTCCTTTGGCTCACTTCTGGGCACACAGTTGCTGCTGATGGGGTGGGTAGAGAGCAAGAGGTGGGTGGACTTCTTCAATCCTGATTCACAATCATTGGAGTGGGCTACACCATGGTCAAGAACCGCGGAGAACTTCGCCAACGCCACCGGCGACCAGGGCTACCCTGGAGGCAAATTCTTTGACCCATTAGGGTTTGCAGGCAAAATCCAAGATGGGGTTTACATTCCTGACGGAGAAAAGCTGGAAAGACTCAAACTTGCTGAGATCAAGCATGCTAGGATTGCTATGTTGGCTATGCTCATCTTCTACTTTGAAGCTGGACAAGGCAAAACACCCCTTGGTGCTCTTGGCTTGTAA 900 0.4944 MRISVSVEILEGSSQVFLVKQSVICLLSLLFSREKFQSQEEMAGAATSGAVLNGLGSSFLCGGKRSQSLFSAKSNNNAVSPKRFFVAAAAAAQPKKSWIPAVRGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSLEWATPWSRTAENFANATGDQGYPGGKFFDPLGFAGKIQDGVYIPDGEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1961 299 SUPERFAMILY Chlorophyll a-b binding protein 109 299 - -
Lele16g1961 299 FunFam Chlorophyll a-b binding protein, chloroplastic 111 298 - -
Lele16g1961 299 Gene3D Chlorophyll a/b binding protein domain 111 297 - -
Lele16g1961 299 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 92 297 IPR001344 GO:0009765|GO:0016020
Lele16g1961 299 Pfam Chlorophyll A-B binding protein 111 287 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1961 Lele-ChrLele16 11936236 11939630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1961 46 299 Chloroplast and Mitochondria Gene Families AT1G15820 82.745 5.64e-154 429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1964 16 11976261 11979432 Lele16g1961 16 11936236 11939630 CCT
Lele13g0567 13 17859346 17870802 Lele16g1961 16 11936236 11939630 CCT
Lele16g1961 16 11936236 11939630 Lele16g1961 16 11936236 11939630 ECH
Lele13g0552 13 17766741 17768610 Lele16g1961 16 11936236 11939630 hybridization
Lele14g0454 14 16202813 16204093 Lele16g1961 16 11936236 11939630 hybridization