Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1949 ATGTCTCACTTTGGAAGGTCGGGTCCTCCAGACATCACGGACACCTATTCGCTTCTAGTGCTCAACATCACATTCCGTACAACAGCCGATGACCTGTTTCCCCTGTTCGATAAGTATGGCAAGGTCGTCGACATCTTTATTCCCAGAGACCGAAGGACTGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGATGAGGCACAAAAGGCTGTGGAAAGGCTGGACGGCAGAGTGGTTGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCACAAAGGAAGGATTAGTGAAACGTTCCCCAAGTCTAGATACAGGTCAAGGAGCCGCAGCCCCAGGAGAAGGCATCGTGATGATTACAGGGACAGGGATTATAGGAGGAGGAGTCGCAGCAGGAGTTATGATAGGTATGAAAGGGATAGGTATCGTGGAAGAGACAGAGATTATCGTCGCAGGAGTAGGAGCCGCAGTGGAAGTGCTGATTACTATAAGAGTCGTGGAAAGGATCGCTATGATGATGAGCGTCGAAGCCGAAGCCGATCTGTGGATAGTCGCTCCCCACGGCGTAGTCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGCTTCACCTCAAAGAAGTATTTCCCCAAGGAGGAGCCCAAGGGGTGAAAGCCCTGAGAGTCATAGTCGTGATGGACGATCACCTACACCTCGTAGTGTTTCACCAAGTGGTCAACCCAAGGATTCAAGAAGCCCATCCCCTCGAAATTCCAATGGAGATGAATGA 801 0.4981 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPNAERIHKGRISETFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSYDRYERDRYRGRDRDYRRRSRSRSGSADYYKSRGKDRYDDERRSRSRSVDSRSPRRSLSPRRSPSPQRSASPQRSISPRRSPRGESPESHSRDGRSPTPRSVSPSGQPKDSRSPSPRNSNGDE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1949 266 MobiDBLite consensus disorder prediction 100 266 - -
Lele16g1949 266 Gene3D - 4 105 IPR012677 -
Lele16g1949 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lele16g1949 266 SMART rrm2_1 17 90 IPR003954 GO:0003676
Lele16g1949 266 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Lele16g1949 266 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 242 - -
Lele16g1949 266 MobiDBLite consensus disorder prediction 201 223 - -
Lele16g1949 266 MobiDBLite consensus disorder prediction 224 238 - -
Lele16g1949 266 MobiDBLite consensus disorder prediction 125 200 - -
Lele16g1949 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lele16g1949 266 MobiDBLite consensus disorder prediction 100 115 - -
Lele16g1949 266 SUPERFAMILY RNA-binding domain, RBD 9 102 IPR035979 GO:0003676
Lele16g1949 266 MobiDBLite consensus disorder prediction 239 266 - -
Lele16g1949 266 SMART rrm1_1 17 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1949 Lele-ChrLele16 11867825 11870730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1949 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 1.83e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0562 13 17825526 17828474 Lele16g1949 16 11867825 11870730 hybridization
Lele14g0466 14 16271970 16274880 Lele16g1949 16 11867825 11870730 hybridization