Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1947 ATGGATTCCACGCATATGGCGCTCTTCAGAGCTCTGAATCGCCATTTCTGCAGAGCTCCTTCGAGTCAATGCATTCCCACGGTTCTTCTCCACCAAAGGCTTAAATGCCTTTCTCATAACCATGCTATACGCAACTGCAGCTCTTTTGCTTCTTCTTCCCTCTCGGTCAGGAGCTTGTGTGCGGTGGTCACCCGACTGCCCTGTCGTTTCCAGTGTGTTTCGCGTTCCGCTGCTCCGTTTTCTTCTTCTGGCGCTGGAAATGGTGGGCTTGGAGGGGTGAGTGGCGGTGGTGGTGATAGAGATGGTGGCGCCGGTGGTGATTCTGGAGATGCTAATCTCAAATTGGTCGGTGATGGTGGTAAAGAACTTTCGGCACTTTCACCTGATGTTATTATTCTTGATGTTGCGGGAATGGTGTGTGGGGGATGTGCGGCTAATGTGAAAAGAATTCTAGAAAGTCGACCTCAAGTGTCATCTGCTACTGTAAATCTAACAACAGAGACAGCCATAGTTTGGCCTGTATCTGAAGCAAAAACTGTACCAAATTGGCAAAAGCAATTAGGAGAGGCGCTTGCAGAGCATTTGACTAGCTGTGGCTTCAAGTCTAGCCTTCGGGATTCAGCAAGAGACAGTTTCCTCCAAGTTTTTGAAAGGAAGATGGAGGAAAAACACAGACAGTTGAAAGAAAGTGGGCGAGAGTTAGCTGTTTCCTGGGCTCTATGTGCTGTCTGCCTTGTTGGCCATCTCTCTCATTTCCTTGGAGCGAAGGCACCTTGGATCCATGCATTTCATTCCACTGGCTTTCACCTATCCCTGTCTTTGTTTACATTGGTTGGTCCGGGGCGTCAACTTATTCTTGATGGCATAAGAAGCCTTCTTAAAAAGGCACCAAACATGAACACATTGGTTGGTCTTGGGTCTTTGTCATCATTTGCTGTCAGCCTATTTGCTGTCTTGCTGCCCAAATTGGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATCGCATTTGTCTTGTTAGGAAGGAATCTGGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACTGGACTTTTGAGTATATTGCCATCAAAGGCTCGCCTTCTGGTTAGCAATGACACTAAGGAGTTTGACTCAAGTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGGAGACCGAATTCTTGTGCTTCCTGGAGATCGTATTCCAGCTGATGGAATTGTCAGAACTGGCAGGAGCACAGTAGATGAGTCAAGTTTTACTGGAGAGCCTCTGCCAGCAACAAAACTACCTGGGAGTCAGGTTGCTGCTGGGAGTATAAATCTAAATGGCACTCTTACAATTCAAGTGCAGAGACCAGGCAGCGAGACTGCCATGGGAGACATCGTTCGTCTGGTTGAAGAAGCACAGAGTAGGGAAGCTCCAGTTCAACGTTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTAATGGCAGCTTCTGCAGCCACATTTACATTCTGGAGTCTGTTTGGCAGACGCATTCTACCTGCTGCTCTTTATCAAGGAAGTGCAGTTTCTCTGGCATTGCAACTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCGTGTGCACTTGGGTTGGCCACACCTACAGCTGTGCTGGTTGGAACTTCTTTGGGAGCTACAAGAGGATTACTTTTACGGGGTGGAAACATTCTGGAGAAGTTTTCAATGGTAGATGCTGTTGTATTTGACAAAACAGGGACCTTGACGATTGGTAGACCAGTTGTGACAAAGATTGTCGTTGCAAGTGGACAAAACAAAAACTTAAGGCAAACTGCTGACAATGATTGGTCAGATGTTGAAGTTCTGAGATTAGCTGCTGGAGTAGAATCAAATACAGTACACCCAATTGGTAAAGCAATTGTAGAGGCTGCTCAGGCAGTTAATTGTCATAGTGCAAAGGCAGCAGATGGAACATTTTTGGAAGAACCTGGGTCTGGTGCAGTAGCAATTATTAATAACAATAAGGTTTCAGTTGGGACTTTGGAATGGCTCATCAGGCAGGGAGTTAACAAAAATATTCATCAAGAAGTTGAGGACTATAGAAATCAGTCTGTTGTTTATGTGGGAGTAAATGATACTGTAGCTGGCCTTGTATATTTTGAAGACCAGATAAGGGAAGATGCTAAACATGTTGTTGAAGCTTTGTCTAAACAAGGAATTGATGTTTATATGCTCTCGGGAGACAAAAGGAGTACGGCTGAGTATGTTGCATCTGTTGTTGGAATTCCTAGAGAGAAGGTGCTATCTGGAGTGAAGCCAGATGACAAAAAGAAGTTTATCAATGAACTCCAGAAAGGTCAGAAATTTGTTGCTATGGTGGGCGATGGGATCAATGATGCAGCTGCCTTGGCTTCTTCACATATTGGTATTGCATTAGGTGGAGGTGTTGGAGCTGCTAGTGAGGTGTCCTCTATTGTACTGATGGGCAACAGGCTCTCACAGCTGCTTGATGCATTGGATCTTAGCAGGCTTACAATGAAGGCTGTGAAACAAAATCTTGGGTGGGCTTTCCTATACAACATTGTTGGAATTCCAATTGCAGCTGGATTTTTACTTCCAGTAAGTGGGACCATGTTGACTCCGTCAATTGCAGGGGCTCTCATGGGCTTGAGTTCCATTGGGGTAATGACAAACTCATTGCTTCTAAGATACAGATTTTCCACAAAGCAAAAACAAATCCATGGCGCATCCCCGAGGATCGAAACCCATGCTGATAGTGATCTGGCCCAGAAAGAGAAATTAAAATATGGACAGTAA 2811 0.4522 MDSTHMALFRALNRHFCRAPSSQCIPTVLLHQRLKCLSHNHAIRNCSSFASSSLSVRSLCAVVTRLPCRFQCVSRSAAPFSSSGAGNGGLGGVSGGGGDRDGGAGGDSGDANLKLVGDGGKELSALSPDVIILDVAGMVCGGCAANVKRILESRPQVSSATVNLTTETAIVWPVSEAKTVPNWQKQLGEALAEHLTSCGFKSSLRDSARDSFLQVFERKMEEKHRQLKESGRELAVSWALCAVCLVGHLSHFLGAKAPWIHAFHSTGFHLSLSLFTLVGPGRQLILDGIRSLLKKAPNMNTLVGLGSLSSFAVSLFAVLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVSNDTKEFDSSVEVPSDSLSVGDRILVLPGDRIPADGIVRTGRSTVDESSFTGEPLPATKLPGSQVAAGSINLNGTLTIQVQRPGSETAMGDIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLFGRRILPAALYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGATRGLLLRGGNILEKFSMVDAVVFDKTGTLTIGRPVVTKIVVASGQNKNLRQTADNDWSDVEVLRLAAGVESNTVHPIGKAIVEAAQAVNCHSAKAADGTFLEEPGSGAVAIINNNKVSVGTLEWLIRQGVNKNIHQEVEDYRNQSVVYVGVNDTVAGLVYFEDQIREDAKHVVEALSKQGIDVYMLSGDKRSTAEYVASVVGIPREKVLSGVKPDDKKKFINELQKGQKFVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMGNRLSQLLDALDLSRLTMKAVKQNLGWAFLYNIVGIPIAAGFLLPVSGTMLTPSIAGALMGLSSIGVMTNSLLLRYRFSTKQKQIHGASPRIETHADSDLAQKEKLKYGQ 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1947 936 SUPERFAMILY HMA, heavy metal-associated domain 131 180 IPR036163 GO:0046872
Lele16g1947 936 CDD HMA 133 203 IPR006121 GO:0046872
Lele16g1947 936 PANTHER ATP7, ISOFORM B 127 902 - -
Lele16g1947 936 SFLD p-type atpase 562 841 IPR044492 -
Lele16g1947 936 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 299 900 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele16g1947 936 FunFam Copper-transporting ATPase PAA1 chloroplastic 707 858 - -
Lele16g1947 936 Gene3D - 349 472 - -
Lele16g1947 936 FunFam Copper-transporting ATPase PAA1 chloroplastic 590 722 - -
Lele16g1947 936 Pfam E1-E2 ATPase 364 557 - -
Lele16g1947 936 SUPERFAMILY Calcium ATPase, transduction domain A 381 468 IPR008250 -
Lele16g1947 936 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 281 901 - -
Lele16g1947 936 SUPERFAMILY HAD-like 578 897 IPR036412 -
Lele16g1947 936 Coils Coil 213 233 - -
Lele16g1947 936 Pfam Heavy-metal-associated domain 133 201 IPR006121 GO:0046872
Lele16g1947 936 CDD P-type_ATPase_Cu-like 232 901 - -
Lele16g1947 936 Gene3D - 570 841 IPR023214 -
Lele16g1947 936 Gene3D - 130 207 - -
Lele16g1947 936 Gene3D - 590 722 IPR023299 GO:0000166
Lele16g1947 936 Pfam haloacid dehalogenase-like hydrolase 575 803 - -
Lele16g1947 936 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872
Lele16g1947 936 ProSitePatterns E1-E2 ATPases phosphorylation site. 581 587 IPR018303 -
Lele16g1947 936 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 331 889 - -
Lele16g1947 936 FunFam Copper-transporting ATPase PAA1, chloroplastic 129 204 - -
Lele16g1947 936 ProSiteProfiles Heavy-metal-associated domain profile. 130 204 IPR006121 GO:0046872
Lele16g1947 936 SFLD Haloacid Dehalogenase 562 841 - -
Lele16g1947 936 FunFam Copper-transporting ATPase 1, putative 350 472 - -
Lele16g1947 936 PRINTS P-type cation-transporting ATPase superfamily signature 791 810 - -
Lele16g1947 936 PRINTS P-type cation-transporting ATPase superfamily signature 814 826 - -
Lele16g1947 936 PRINTS P-type cation-transporting ATPase superfamily signature 418 432 - -
Lele16g1947 936 PRINTS P-type cation-transporting ATPase superfamily signature 736 746 - -
Lele16g1947 936 PRINTS P-type cation-transporting ATPase superfamily signature 579 593 - -
Lele16g1947 936 PRINTS P-type cation-transporting ATPase superfamily signature 714 725 - -
Lele16g1947 936 SUPERFAMILY Calcium ATPase, transmembrane domain M 331 870 IPR023298 -
Lele16g1947 936 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 623 870 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele16g1947 936 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 381 601 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1947 Lele-ChrLele16 11832190 11857405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1947 290 901 Primary Pumps ATPases AT1G63440 38.315 4.66e-118 383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0565 13 17845823 17849146 Lele16g1947 16 11832190 11857405 hybridization
Lele14g0468 14 16285871 16307290 Lele16g1947 16 11832190 11857405 hybridization