Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1945 ATGGCGGAGCGTGATTCTTACGGCGGGCTGGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGATGGTTGCGTCCTGCTGAAATTTGTGAAATCCTTCGTAATTATCAGATGTTTCATATCACATCAGAACCTCCAAACATGCCACCGAGTGGTTCACTTTTTCTTTTTGATAGGAAGGTATTGAGGTATTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAGGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTATTACATTGCTACTATGCTCATGGTGAAGAAAATGAAAATTTCCAGAGGCGAAGCTATTGGTTGCTTGAACAGGATATGATGCACATTGTTTTCGTCCACTACTTGGAAGTTAAGGGTCATAGGACAAGTGTTGGAGTAAAACCTGATATTAATGAGGTTTCATCAGATTCTCAAAGAGGCAGCTCTGCATCATCTGGTTTTTCGAGAACTTATAATACTGTGCCTTCAGGAAGTACAGATTCCATGAGCCCAACTAGCACTTTGACATCCCTGTGTGAAGATGCTGACTCTGGGTATCATGCACAGTCATTGATTTCTGGAGCAGACCACATTTTACAAGTTCAGCGAGATAAACATAGAGGCAGTGATGCTAGTACTTCTTTCTTTGATGGCCAAAAAACAAATGGAATGGCCTTACGGGACAAAGGCTTTGAACAATGTACAAATGGATTATCTGCTGATCCATCCCTTGTATCACTTACTTCCATCCCATCCAATTCAATAGGAAACATTCTTGAACCAGAAAATACTGTTCCGGGTGACCTTTTAGCCATAAACAATGTCCTCATTGGGACAGCTGGGAGTTCTCAATCCCTCCAATCAAATTGGCAGATCCCTTTTGAAAGTAATCCAGAAAAGATGTCCAAAGAGCTTACTGCCCAATCTCTGGGTTTTGAATTTGGATCTGATTTTAGCAATGGCATGCGGGGACATGAAATACATAATCATGTTGCTTCTGGCCCGGTAACTTTTAACTGTCAGCGAAAAGAGGAGACTGTGCTGGAAAACTTTCCAGACCAGCATACAGATACTCAATCTCAAATTTTGCTGAAATACAATTATGGGAATGAAGCTCCCACAGAAGAAAGTATTAATTATGCCTTGACTGTGAAGCGGTCCTTATTAGATGGGGAAAGCCTAAAGAAAGTTGACAGCTTCTCTCGATGGATTACTAAAGAGCTTGAAGAGGTGGATGATCTTCATATGCAGTCATCACCTGGCATTTCTTGGAGCGCTGATGAATGTGGGCATGTGATAGATGATTCCTCATTGAGCCCCTCCCTCTCTCAGGACCAGCTGTTTAGCATAAATGATTTTTCACCTAACTTTGCTTATGCTGAATCGGAAACAGAGGTTTTGATTATTGGAACATTTTTGAAGAGTCAAACAGAGGTAGCGAATTGTAACTGGTCGTGCATGTTTGGGGAAGTTGAGGTTCCTGCCGAGGTTCTAGCCAGTGGAATCTTGTGCTGTCAGGCTCCACCTCTCAAGGTTGGACGGGTTCCCTTCTATGTAACATGCTCCAATAGGTTGGCTTGCAGTGAAGTGCGTGAATTTGATTACACGGAGAGCTTCGCTGAAAATGTTGATGTTTCAGATTTCTATAACAGTTCAACTGAGATGCAGCTTCATCTGAGACTAGAGAAGCTACTTTCTTCAAAATCAGCGCTCCCTTCAAATTACTGCTTTGCCAATGATATGTTGAAAAGAAACTTAATGTTTAAGCTCATTACGCTAAAAGAGGAAGAGGCGTTTGCAGACAGGGAAGAGCTGATGTCAGAAAACAATGCGTCCCAACAAAAGGTGAAGGAGTTAATATTTTACAGGCAAGTTAAAGAGAAGCTGTACTCTTGGCTGCTTCGCAAAGTAATTGAAGATGGTAAAGGGCCAAATGTTTTGGATGAAGAGGGGCAAAGCGTGCTTCATTTAGCAGCTGCTCTTGGTTATGAGTGGGCAATAATGCCAATCGTTACTGCTGGAGTAAATATCAATTTTCGCGATGTGAATGGATGGACAGCTCTGCACTGGGCTGCATCCTATGGAAGGGAACGGACCGTTGCTGTACTTGTCTCCATGGGTGCAGCTGCTGGAGCATTGGCAGATCCGTCCCCAACGTTTCCCTCTGGTAGAACAGCAGCAGATCTTGCTTCTAGCAATGGGCACAAAGGAATCTCTGGTTTCCTTGCAGAATCTTCATTAACCAGCCACCTTTCAACCCTCACAATGAATGATCAGAAGGGAGATGTTGGGCAAAAAGTTTCAGAAGTAGAAGTACAGACAGTTTCAAAACGAACTGCAACACCAGGGTTTAGCGGTGATATGCCAGATGCCCTCTGCCTTAAGGATTCCCTTACTGCTGTTCGTAATGCTACACAGGCGGCTGATCGTATATACCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTGACTCAGTTTGAAGATGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCCCTTATAGCTTCTAAGGCATGCAAGGCTGGATATGGAGATGATTTAGCCCATACTGCTGCTGTACAAATACAGAAAAAGTTTCGTGGCTGGAAGAAAAGAAAAGAATTTCTCATAATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGAATAAATCAGTCCTCTGGTCTGTTGGAATTTTGGAGAAGGTAATATTGCGATGGAGACGCAAGGGCAGCGGTCTACGTGGCTTCCGACCAGATGCTAATAAAATCCCCAACCAAGAAAATGACACTGTGAAAGAGGATGATTACGATGTTCTCAAGGAAGGGAGGAAACAAAGTGAAGAAAGGTTCCAAAAGGCACTTTCAAGGGTTAAGTCTATGGTTCAGTATCCAGAGGCACGGGCTCAGTACCGGCGTTTGCTAAATGTTGTCGAGGACTTCCGCCTAACCAAGGCATGCGATATGGATGTGATAAATTCAGAAGAGACAGTGGATGGTGTAGAGGACCTTATTGATATTAACATGCTCTTAGATGATGACAATTTCATACCCATAGCATTTTGA 3135 0.4284 MAERDSYGGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYQMFHITSEPPNMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWLLEQDMMHIVFVHYLEVKGHRTSVGVKPDINEVSSDSQRGSSASSGFSRTYNTVPSGSTDSMSPTSTLTSLCEDADSGYHAQSLISGADHILQVQRDKHRGSDASTSFFDGQKTNGMALRDKGFEQCTNGLSADPSLVSLTSIPSNSIGNILEPENTVPGDLLAINNVLIGTAGSSQSLQSNWQIPFESNPEKMSKELTAQSLGFEFGSDFSNGMRGHEIHNHVASGPVTFNCQRKEETVLENFPDQHTDTQSQILLKYNYGNEAPTEESINYALTVKRSLLDGESLKKVDSFSRWITKELEEVDDLHMQSSPGISWSADECGHVIDDSSLSPSLSQDQLFSINDFSPNFAYAESETEVLIIGTFLKSQTEVANCNWSCMFGEVEVPAEVLASGILCCQAPPLKVGRVPFYVTCSNRLACSEVREFDYTESFAENVDVSDFYNSSTEMQLHLRLEKLLSSKSALPSNYCFANDMLKRNLMFKLITLKEEEAFADREELMSENNASQQKVKELIFYRQVKEKLYSWLLRKVIEDGKGPNVLDEEGQSVLHLAAALGYEWAIMPIVTAGVNINFRDVNGWTALHWAASYGRERTVAVLVSMGAAAGALADPSPTFPSGRTAADLASSNGHKGISGFLAESSLTSHLSTLTMNDQKGDVGQKVSEVEVQTVSKRTATPGFSGDMPDALCLKDSLTAVRNATQAADRIYQVFRMQSFQRKQLTQFEDDEFGLSDQQALSLIASKACKAGYGDDLAHTAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQNKSVLWSVGILEKVILRWRRKGSGLRGFRPDANKIPNQENDTVKEDDYDVLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRLLNVVEDFRLTKACDMDVINSEETVDGVEDLIDINMLLDDDNFIPIAF 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1945 1044 ProSiteProfiles Ankyrin repeat profile. 662 694 IPR002110 GO:0005515
Lele16g1945 1044 ProSiteProfiles Ankyrin repeat region circular profile. 662 693 - -
Lele16g1945 1044 SUPERFAMILY Ankyrin repeat 646 756 IPR036770 -
Lele16g1945 1044 SUPERFAMILY E set domains 462 547 IPR014756 -
Lele16g1945 1044 Pfam IQ calmodulin-binding motif 895 912 IPR000048 GO:0005515
Lele16g1945 1044 Pfam IQ calmodulin-binding motif 872 890 IPR000048 GO:0005515
Lele16g1945 1044 ProSiteProfiles Ankyrin repeat region circular profile. 695 720 - -
Lele16g1945 1044 SMART ANK_2a 695 724 IPR002110 GO:0005515
Lele16g1945 1044 SMART ANK_2a 662 691 IPR002110 GO:0005515
Lele16g1945 1044 SMART ANK_2a 734 763 IPR002110 GO:0005515
Lele16g1945 1044 MobiDBLite consensus disorder prediction 147 184 - -
Lele16g1945 1044 FunFam Calmodulin-binding transcription activator 2 869 917 - -
Lele16g1945 1044 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Lele16g1945 1044 SMART CG_1_2 19 137 IPR005559 GO:0003677
Lele16g1945 1044 Pfam Ankyrin repeats (3 copies) 667 757 IPR002110 GO:0005515
Lele16g1945 1044 Gene3D Immunoglobulins 455 551 IPR013783 -
Lele16g1945 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 919 IPR027417 -
Lele16g1945 1044 ProSiteProfiles IQ motif profile. 870 899 IPR000048 GO:0005515
Lele16g1945 1044 Gene3D - 868 916 - -
Lele16g1945 1044 FunFam Calmodulin-binding transcription activator 2 455 551 - -
Lele16g1945 1044 ProSiteProfiles Ankyrin repeat profile. 695 727 IPR002110 GO:0005515
Lele16g1945 1044 Pfam IPT/TIG domain 462 540 IPR002909 -
Lele16g1945 1044 Gene3D - 621 767 IPR036770 -
Lele16g1945 1044 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 1004 - -
Lele16g1945 1044 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Lele16g1945 1044 SMART iq_5 892 914 IPR000048 GO:0005515
Lele16g1945 1044 SMART iq_5 869 891 IPR000048 GO:0005515
Lele16g1945 1044 ProSiteProfiles IQ motif profile. 893 917 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1945 Lele-ChrLele16 11808042 11818298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1945 1 1026 CAMTA Transcription Factor Family AT5G64220 51.637 0.0 1010
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lele16g1945 CG-1 7.2e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0480 14 16464300 16468580 Lele16g1945 16 11808042 11818298 CCT
Lele15g1905 15 11757378 11759039 Lele16g1945 16 11808042 11818298 CCT
Lele16g1933 16 11697689 11703449 Lele16g1945 16 11808042 11818298 CCT
Lele13g0567 13 17859346 17870802 Lele16g1945 16 11808042 11818298 hybridization
Lele14g0470 14 16327244 16337673 Lele16g1945 16 11808042 11818298 hybridization